PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_107410_ucwr.t1

Common Name

SOVF_107410

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

WRKY

Protein Properties

Length: 204aa MW: 23513.7 Da PI: 5.7399

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_107410_ucwr.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	9.1e-31	143	201	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YYrC gCpvkk+ver+++d k+v++tYeg+Hnh+ Sp_107410_ucwr.t1 143 VDDGYKWRKYGKKMVKNSPNPRNYYRCGVDGCPVKKRVERDRDDMKYVITTYEGNHNHD 201 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.5E-33	128	203	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-28	136	203	IPR003657	WRKY domain
PROSITE profile	PS50811	32.512	138	203	IPR003657	WRKY domain
SMART	SM00774	1.7E-34	143	202	IPR003657	WRKY domain
Pfam	PF03106	5.9E-24	144	201	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MTMASPNVNT SLCFVPFSTL PYQNNNNNNL MNYTNTNTNT NTNTNTNTTA TFSSLESSGS 60 DQYFEQGTDF EVSDFFSFED WGNQQQCMDS GLMNTQDFVY QGSELLQNTS SIQHEGENSN 120 VIRNVRQKKE RVAFRMKSEI DVVDDGYKWR KYGKKMVKNS PNPRNYYRCG VDGCPVKKRV 180 ERDRDDMKYV ITTYEGNHNH DAPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-27	131	203	2	74	WRKY transcription factor 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855807.1	1e-128	probable WRKY transcription factor 50
TrEMBL	A0A0K9R690	1e-151	A0A0K9R690_SPIOL; Uncharacterized protein
STRING	XP_010669354.1	8e-77	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	4e-41	WRKY DNA-binding protein 50