PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_107930_fsnu.t1
Common NameSOVF_107930
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 313aa    MW: 35068.6 Da    PI: 8.733
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_107930_fsnu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.9e-106387126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       ykt+lC+ f++ G C+y  +C+FaHg
  Sp_107930_fsnu.t1 63 YKTKLCCKFRA-GVCPYVTNCNFAHG 87
                       9**********.*************9 PP
2zf-CCCH17.66.9e-06137162126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yk + C+ f+    C+yG++C+F H+
  Sp_107930_fsnu.t1 137 YKGRHCKKFYTEEGCPYGENCTFLHD 162
                        78888********************7 PP
3zf-CCCH43.45.5e-14197222126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt++C+ +  tG C++G++C+FaHg
  Sp_107930_fsnu.t1 197 WKTRICNKWETTGSCPFGSKCHFAHG 222
                        8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-146095IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-86093IPR000571Zinc finger, CCCH-type
SMARTSM003560.00126288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1416289IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-76387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-9135164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-7135164IPR000571Zinc finger, CCCH-type
SMARTSM003560.32136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788136164IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-17192227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-10193227IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8196223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563196224IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-11197222IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MIRQFGQLKM SIEIGIIVKQ PVTTYLHCSV WDQVAELSLP IKRLGAPPRV AAMLRRXIGK  60
MFYKTKLCCK FRAGVCPYVT NCNFAHGLEE LRKPPPNWQE IVAAHEEERG VTVEQREEHQ  120
IPTISTSELR NESPRTYKGR HCKKFYTEEG CPYGENCTFL HDEQSRARES VAISVNPTVG  180
GGTAYGANGP TQKPSNWKTR ICNKWETTGS CPFGSKCHFA HGLAELHKFS GLDGEGRDSP  240
MPAETKPSGM TTKTDTLTSP NLLTLPRQEY HHVGIPSQRS SSVPQAVGQR AAHKWKGPDK  300
ISRIYGDWID DIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860049.10.0zinc finger CCCH domain-containing protein 56
RefseqXP_021860050.10.0zinc finger CCCH domain-containing protein 56
RefseqXP_021860051.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ31e-109C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A0K9R6140.0A0A0K9R614_SPIOL; Uncharacterized protein
STRINGXP_010671084.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-99C3H family protein