PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_108670_uuee.t1
Common NameSOVF_108670
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WOX
Protein Properties Length: 239aa    MW: 27252.5 Da    PI: 9.7571
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_108670_uuee.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.51.7e-2190149357
                        --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                        +R+++t+eq+ +Le l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  Sp_108670_uuee.t1  90 TRWNPTQEQIGILEMLYRGgMRTPNAQQIEQITEQLskygKIEGKNVFYWFQNHKARERQ 149
                        7*****************99**************************************97 PP
2Wus_type_Homeobox119.12e-3890151465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+Pt+eQi iLe+ly+ G+rtPn+++i++it++L++yGkie+kNVfyWFQN+kaRerqkq
  Sp_108670_uuee.t1  90 TRWNPTQEQIGILEMLYRGGMRTPNAQQIEQITEQLSKYGKIEGKNVFYWFQNHKARERQKQ 151
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.58E-1283154IPR009057Homeodomain-like
PROSITE profilePS5007110.65785150IPR001356Homeobox domain
SMARTSM003891.9E-687154IPR001356Homeobox domain
CDDcd000867.62E-590151No hitNo description
PfamPF000463.6E-1990149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-891149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGSSSMKVHP FARGFWDNHQ SHDPQAGFSL GCKRFRPLAP KVNTNNVVAT PCFDLKSFIK  60
PDNGPRNHVS PCHLNNHSPS HQVESQAGGT RWNPTQEQIG ILEMLYRGGM RTPNAQQIEQ  120
ITEQLSKYGK IEGKNVFYWF QNHKARERQK QKRTNLGLSH YPRTPTAATA TAATATTQVD  180
TSITLTLDTK FSLQADIEEQ QMSPYKRKYR NWLTFESSDE NPQKEDKTLE LFPLHPEGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838300.10.0WUSCHEL-related homeobox 4 isoform X1
SwissprotQ6X7J91e-68WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A0K9R3T80.0A0A0K9R3T8_SPIOL; Uncharacterized protein
STRINGXP_010688717.11e-104(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.17e-68WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]