PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_111850_orhn.t1
Common NameSOVF_111850
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family BES1
Protein Properties Length: 336aa    MW: 36143.2 Da    PI: 9.4457
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_111850_orhn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222281.7e-7041531148
             DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 
                        g+sgr ptwkErEnnk+RERrRRaiaaki++GLRaqGnyklpk++DnneVlkALcreAGw+ve+DGttyrkg++p+  +++ag+sa++s +s
  Sp_111850_orhn.t1   4 GASGRLPTWKERENNKKRERRRRAIAAKIFTGLRAQGNYKLPKHCDNNEVLKALCREAGWIVEEDGTTYRKGCNPP-PMDMAGTSANISGCS 94 
                        689*************************************************************************.*************** PP

             DUF822  93 slqsslkssalaspvesysaspksssfpspssldsislasa...asllpvlsvlslvss 148
                        slq+s++ssa +sp++sy+asp+sssfpsps++ds++  ++   + llp+l++l++++ 
  Sp_111850_orhn.t1  95 SLQHSPQSSAYPSPIPSYHASPTSSSFPSPSRYDSNPRYDSnpsNYLLPFLRNLASIPT 153
                        ************************************99888888999999999988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056877.6E-666148IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGGGASGRLP TWKERENNKK RERRRRAIAA KIFTGLRAQG NYKLPKHCDN NEVLKALCRE  60
AGWIVEEDGT TYRKGCNPPP MDMAGTSANI SGCSSLQHSP QSSAYPSPIP SYHASPTSSS  120
FPSPSRYDSN PRYDSNPSNY LLPFLRNLAS IPTNLPPIRI SNSAPVTPPL SSPTSRGSKR  180
KVEWESLSNS NCSGSQQSAA RNQAFAVSAP SSPTRRNNIN TPTIPECDES DASTVDSGRW  240
VSFQTGPPSL GTGTPTSPTF NLVKQAVAQR SAMQGILNGT MALGWGGPMD QRGRGLEFEF  300
GNGAAVMAWE GERIHEVSTD DLELTLGNNA NAKAKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-29888372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-29888372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-29888372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-29888372452Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835401.10.0BES1/BZR1 homolog protein 2
SwissprotQ94A431e-102BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A0K9R4T90.0A0A0K9R4T9_SPIOL; Uncharacterized protein
STRINGXP_010680895.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.21e-90BES1 family protein