PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_112720_jcmg.t1
Common NameSOVF_112720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 219aa    MW: 23969.5 Da    PI: 4.4009
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_112720_jcmg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-194292155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Sp_112720_jcmg.t1 42 PVYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFNTPEMAARAHDVAALCIKG 92
                       68*****998.**********843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-134292IPR001471AP2/ERF domain
SMARTSM003801.5E-3743106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3243101IPR001471AP2/ERF domain
PROSITE profilePS5103223.07743100IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-2243101IPR016177DNA-binding domain
CDDcd000184.79E-3244102No hitNo description
PRINTSPR003672.1E-104455IPR001471AP2/ERF domain
PRINTSPR003672.1E-106682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MADGHERTEP ETSQNDTTST SSSQTPSGLP NNKRKRENSK DPVYRGVRMR AWGKWVSEIR  60
EPRKKSRIWL GTFNTPEMAA RAHDVAALCI KGNSAILNFP ELAKSLPRPA SNSPRDVQAA  120
AALAAAMVSP SPSQSPAVSS SSSEVNGPEE ELSQIVELPS LEDEGADSAE SMSELVLVDS  180
VEEWAYSSVW TDEMMLRDFL YESTADISLA DYGVGYTYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18441011573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862836.11e-160ethylene-responsive transcription factor ERF037
SwissprotQ9LYD39e-52DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0K9R2Z11e-158A0A0K9R2Z1_SPIOL; Uncharacterized protein
STRINGXP_010691437.12e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]