PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_112730_pauf.t1
Common NameSOVF_112730
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 219aa    MW: 23522.1 Da    PI: 4.6183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_112730_pauf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1668116255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+  +++ g+Wv+eIr p++   ++r++lg+f t+e+Aa+a++aa+++l+g
  Sp_112730_pauf.t1  68 LYRGI--RPRGGKWVSEIRQPRK---TTRIWLGTFPTPEMAAAAYDAAALALKG 116
                        69***..699**********843...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.50E-1767126No hitNo description
SuperFamilySSF541713.2E-1868125IPR016177DNA-binding domain
SMARTSM003805.5E-3068130IPR001471AP2/ERF domain
PfamPF008479.8E-1068116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.2E-2768125IPR001471AP2/ERF domain
PROSITE profilePS5103219.90268124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MADQTESSNV NKLLFQQPSS LPQLPLQTHP YQQSPLPPPP PPPLAVAAGP SSMSSALPIG  60
SPTGKHPLYR GIRPRGGKWV SEIRQPRKTT RIWLGTFPTP EMAAAAYDAA ALALKGSEAV  120
LNFPEDVLKY PVPASASPAD VRKVAGAXXA DESGLEKGGN EGVEEEFIDI EAFFNMPNLL  180
VDMAGAMMVS PPRMSSTYDR DLPEDHYDIG GSGSLWNYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1464127366ATERF1
3gcc_A2e-1464127366ATERF1
5wx9_A2e-14651261174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844449.11e-133ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-41ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0K9R4J61e-155A0A0K9R4J6_SPIOL; Uncharacterized protein
STRINGXP_010669007.11e-70(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-42ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]