PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_112880_awsp.t2

Common Name

SOVF_112880

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

SBP

Protein Properties

Length: 109aa MW: 12611.8 Da PI: 7.859

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_112880_awsp.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.7	2.5e-41	23	98	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+++C++dl++ak+yhrrhkvCe+h+kapvv+v+ ++qrfCqqCs+fh++sefD++krsCrrrLa+hnerrrk++ Sp_112880_awsp.t2 23 CQADNCTSDLTDAKRYHRRHKVCEFHAKAPVVIVNSKHQRFCQQCSKFHDVSEFDDTKRSCRRRLAGHNERRRKNS 98 **************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.4E-32	20	84	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.992	20	97	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-38	21	101	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.0E-31	23	96	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MEGFNNDDDH FMGGSLPNVD VYCQADNCTS DLTDAKRYHR RHKVCEFHAK APVVIVNSKH 60 QRFCQQCSKF HDVSEFDDTK RSCRRRLAGH NERRRKNSYD VSAESSSAD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-34	13	96	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835590.1	1e-68	squamosa promoter-binding protein 1-like
Swissprot	Q38741	2e-39	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A0K9R2V1	4e-75	A0A0K9R2V1_SPIOL; Uncharacterized protein
STRING	XP_002509450.1	2e-43	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	5e-40	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]