PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_113280_jqcd.t1
Common NameSOVF_113280
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 385aa    MW: 44347.4 Da    PI: 8.0475
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_113280_jqcd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.3e-076788223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ Cg +F+ + +Lk+H+ +H
  Sp_113280_jqcd.t1 67 TCEECGATFKKPAHLKQHMLSH 88
                       6*******************99 PP
2zf-C2H219.92e-06108132123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp  dC+ s++rk++L+rH+  H
  Sp_113280_jqcd.t1 108 FVCPinDCSASYRRKDHLNRHLLQH 132
                        89*******************9887 PP
3zf-C2H211.30.0011137162123
                        EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                        +kCp  +C+  Fs + n  rH++  H
  Sp_113280_jqcd.t1 137 FKCPieNCSSEFSVQGNISRHLKEyH 162
                        89*********************988 PP
4zf-C2H218.74.9e-06177201123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++C+   Cgk F+  s+L++H  +H
  Sp_113280_jqcd.t1 177 HVCEenGCGKEFKYASQLRKHAESH 201
                        789999***************9988 PP
5zf-C2H215.93.8e-05266290223
                        EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                        kC+   C+ sF++ksn+++H +  H
  Sp_113280_jqcd.t1 266 KCSfeGCDHSFTTKSNMQQHVKAvH 290
                        79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355252042IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8036693IPR007087Zinc finger, C2H2
SMARTSM003550.00416688IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-56789IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.7E-56799No hitNo description
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576675.12E-6101134No hitNo description
Gene3DG3DSA:3.30.160.604.3E-9102134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.66108137IPR007087Zinc finger, C2H2
SMARTSM003558.6E-4108132IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.7E-4135165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.889137167IPR007087Zinc finger, C2H2
SMARTSM003550.08137162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139162IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.0E-6176201IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.367177201IPR007087Zinc finger, C2H2
SMARTSM003550.0025177201IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280179201IPR007087Zinc finger, C2H2
SMARTSM0035524208233IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280210233IPR007087Zinc finger, C2H2
SMARTSM0035535236257IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.48E-8248303No hitNo description
SMARTSM003552.0E-4265290IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489265295IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-8266291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280267290IPR007087Zinc finger, C2H2
SMARTSM003555.3296322IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280298322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MGEELEERER GPIFSDIRRY YCQFCGICRS KKSLINSHIL SHHQEEMEEK REIGGEEETE  60
GQKCNNTCEE CGATFKKPAH LKQHMLSHSL EIMIFCGTSD THSFKRSFVC PINDCSASYR  120
RKDHLNRHLL QHKGKLFKCP IENCSSEFSV QGNISRHLKE YHGDKHEPDS GKGQIKHVCE  180
ENGCGKEFKY ASQLRKHAES HVLGSSESFC ADPSCMKPFS NVECLKAHIR SCHQYVNCEV  240
CGSKHLRKNY KRHLLTHGEH LPTILKCSFE GCDHSFTTKS NMQQHVKAVH LQLRPFICSI  300
PGCGMKFAFK HVRDNHEKTG RHVHVHGDLE EFDEQFRSRP RGGRKRKLPC VEMLMRKRIS  360
PPNHCDGVLD DSSEFLSWLL SDDVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A5e-1110631920183Aart
2i13_B5e-1110631920183Aart
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338346RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861807.10.0transcription factor IIIA-like
SwissprotQ84MZ41e-140TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9R4E80.0A0A0K9R4E8_SPIOL; Uncharacterized protein
STRINGXP_010673198.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-137transcription factor IIIA