PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_113770_orfu.t1
Common NameSOVF_113770
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 89aa    MW: 10177.7 Da    PI: 8.9907
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_113770_orfu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEdellv ++++ G g+W++ ++  g++R++k+c++rw +yl
  Sp_113770_orfu.t1 15 KGPWTPEEDELLVSYIQKNGLGSWRALPKAAGLNRCGKSCRLRWTNYL 62
                       79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-24965IPR009057Homeodomain-like
PROSITE profilePS5129423.231066IPR017930Myb domain
SMARTSM007172.3E-141464IPR001005SANT/Myb domain
PfamPF002492.1E-171562IPR001005SANT/Myb domain
SuperFamilySSF466892.48E-241689IPR009057Homeodomain-like
CDDcd001677.44E-111762No hitNo description
Gene3DG3DSA:1.10.10.604.5E-96689IPR009057Homeodomain-like
PROSITE profilePS512948.2876789IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MGRSPCCNDV SELKKGPWTP EEDELLVSYI QKNGLGSWRA LPKAAGLNRC GKSCRLRWTN  60
YLRPDIKRGR FTEDEEDMII KLHSVLGNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-171089280B-MYB
1h8a_C2e-17128924100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852372.17e-60transcription factor MYB39-like
SwissprotQ9SBF31e-45MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A0K9R2G52e-59A0A0K9R2G5_SPIOL; Uncharacterized protein
STRINGXP_010695546.13e-54(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.15e-48myb domain protein 92
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]