PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_114070_wyan.t1
Common NameSOVF_114070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 560aa    MW: 61860.1 Da    PI: 5.2593
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_114070_wyan.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-174188148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT  Ed +l ++v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Sp_114070_wyan.t1 41 KGPWTSAEDTILMEYVTKHGEGNWNAVQKHSGLSRCGKSCRLRWANHL 88
                       79******************************************9986 PP
2Myb_DNA-binding52.21.4e-1694137146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++
  Sp_114070_wyan.t1  94 KGSFTPEEENRIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 137
                        799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0283688IPR017930Myb domain
SuperFamilySSF466893.26E-3038135IPR009057Homeodomain-like
SMARTSM007177.0E-144090IPR001005SANT/Myb domain
PfamPF002495.3E-154188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-244295IPR009057Homeodomain-like
CDDcd001673.50E-104388No hitNo description
PROSITE profilePS5129426.2589143IPR017930Myb domain
SMARTSM007171.8E-1693141IPR001005SANT/Myb domain
PfamPF002491.3E-1594137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-2696141IPR009057Homeodomain-like
CDDcd001675.00E-1296137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MIEMTSDSDK RKAARCRKNS PGAEEVSSGG NSSGGGSSLK KGPWTSAEDT ILMEYVTKHG  60
EGNWNAVQKH SGLSRCGKSC RLRWANHLRP DLKKGSFTPE EENRIIELHA KMGNKWARMA  120
AELPGRTDNE IKNYWNTRIK RLQRAGLPIY PASVRMQAMN DSQQSDDMMS CQNGDNIHHS  180
EASETNGFEI PDVEFKNLGI NQGYLNCSPS HLLDIPPSSL LHHKGLSSSN CYNNNNNNNY  240
MFSALNPHKR LREVENQFHV SVASTSNNAF PTFEQHEDDP FVRPLWSYDP DLNVNNQTSS  300
IDVLGSHAPI IINGNNNSSS SEPVSEAMKL ELPSLQYSAS QVGSWATPSS PLPSLESVDT  360
LIQSPLSEHT QSNCPSPRNS GTLEEVVYES KSKKCSKYNT SHQQMMMDGF ESSSHNVVRE  420
TIRDACCGEP ISPLSNSAAS VFVEFTPASG GSSSDEPQSA ETIPGKFDWV SAESDEKKDV  480
SFENLRPDAL LDSLYWFRQR IGRSKDESIT GDFGALLGDD LSYEHKQGGA LPIDDSNQSF  540
GLGFSTWDSI CAFYPFSKND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30351411106B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00279DAPTransfer from AT2G26960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843404.10.0transcription factor GAMYB-like
TrEMBLA0A0K9R2L50.0A0A0K9R2L5_SPIOL; Uncharacterized protein
STRINGXP_010673830.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26960.13e-84myb domain protein 81