PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_114870_heda.t1
Common NameSOVF_114870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 271aa    MW: 29249.2 Da    PI: 7.7493
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_114870_heda.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601279.1e-40341341100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+
  Sp_114870_heda.t1  34 PCGACKFLRRKCTNGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRQDAVVTISYEAQARLSDPVYGCVSTILALQQQVATLQ 125
                        7***********************9989**************************************************************** PP

             DUF260  92 aelallkee 100
                        aela+++++
  Sp_114870_heda.t1 126 AELAMVQSQ 134
                        *****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.98933135IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3934132IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPDHRGQGEQ GRRKGGLGKR ASAASGEQEG TLAPCGACKF LRRKCTNGCI FAPHFGSDQG  60
AARFAAVHKV FGASNVSKLL LHIPVNRRQD AVVTISYEAQ ARLSDPVYGC VSTILALQQQ  120
VATLQAELAM VQSQVMNSRL AMANALQTSQ QHQQHQQLSN NNGYEVMHLP HHHHVHQPAY  180
SNNSSASNNL LNLNNTTTAT ATATAAAAYA SYNNNNNNNS NEFGATVADA STAPSSHSLD  240
LLRLSRPSQD DDEDDEHISR NHIAFANHLI H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-37241371113LOB family transfactor Ramosa2.1
5ly0_B6e-37241371113LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863929.11e-141LOB domain-containing protein 20-like
SwissprotQ9SRV32e-71LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A0K9R2B10.0A0A0K9R2B1_SPIOL; Uncharacterized protein
STRINGXP_010677793.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-57LOB domain-containing protein 20