PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_115120_pxcs.t1

Common Name

SOVF_115120

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRF

Protein Properties

Length: 415aa MW: 45444 Da PI: 7.271

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_115120_pxcs.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.1	4.8e-26	168	211	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Sp_115120_pxcs.t1 168 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHMHRGRNRSRKPVE 211 79***************************************987 PP
2	QLQ	50.3	7.5e-18	96	131	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ aQ+q+L+ Q+l+y+++aa++ vPpeLlq ++k Sp_115120_pxcs.t1 96 SFSLAQWQELELQALIYRHMAAGASVPPELLQLVKK 131 8*******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.0E-10	95	131	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.3E-13	96	129	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.767	96	131	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.169	168	212	IPR014977	WRC domain
Pfam	PF08879	5.4E-22	169	211	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MDFNLKQWRD QQQQEQHESE DEQQQHSAKI PKYFLLESPQ QHQQHPEIAA LPLFVSSESQ 60 PNKITTTHFS EYPDHHSSNP PTAIPTRFPR VGGRYSFSLA QWQELELQAL IYRHMAAGAS 120 VPPELLQLVK KSLLTSSTAP YYLHHYSPHF QPAAALLQAG YWGKGSMDPE PGRCRRTDGK 180 KWRCSRDVVA GHKYCERHMH RGRNRSRKPV EFPATATATA TATATASVSA GDALVGSLNK 240 PSAAASVSAE SQFSLSRSGA SSFDAFHLNP GSSSDRKTLF GPQLESSTCI DNGGKSDNNS 300 SKVLMQFFDD WPRSDNGEGN TITSSSGLSI STTSDFLRLS TGNGDELGRM DGNENQERER 360 GNRLSWGADG WGTNPVTSMG GPLAEALRSS SNSSPTSVLH QLPRCSATDT SFVST

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MDFNLKQWRD QQQQEQHESE DEQQQHSAKI PKYFLLESPQ QHQQHPEIAA LPLFVSSESQ  60
PNKITTTHFS EYPDHHSSNP PTAIPTRFPR VGGRYSFSLA QWQELELQAL IYRHMAAGAS  120
VPPELLQLVK KSLLTSSTAP YYLHHYSPHF QPAAALLQAG YWGKGSMDPE PGRCRRTDGK  180
KWRCSRDVVA GHKYCERHMH RGRNRSRKPV EFPATATATA TATATASVSA GDALVGSLNK  240
PSAAASVSAE SQFSLSRSGA SSFDAFHLNP GSSSDRKTLF GPQLESSTCI DNGGKSDNNS  300
SKVLMQFFDD WPRSDNGEGN TITSSSGLSI STTSDFLRLS TGNGDELGRM DGNENQERER  360
GNRLSWGADG WGTNPVTSMG GPLAEALRSS SNSSPTSVLH QLPRCSATDT SFVST

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021865891.1	0.0	growth-regulating factor 3 isoform X2
TrEMBL	A0A0K9R278	0.0	A0A0K9R278_SPIOL; Uncharacterized protein
STRING	XP_010683855.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	6e-52	growth-regulating factor 4