PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_115120_pxcs.t3

Common Name

SOVF_115120

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

GRF

Protein Properties

Length: 411aa MW: 45147.6 Da PI: 7.271

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_115120_pxcs.t3	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.1	4.7e-26	164	207	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e Sp_115120_pxcs.t3 164 DPEPGRCRRTDGKKWRCSRDVVAGHKYCERHMHRGRNRSRKPVE 207 79***************************************987 PP
2	QLQ	50.3	7.4e-18	96	131	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +F+ aQ+q+L+ Q+l+y+++aa++ vPpeLlq ++k Sp_115120_pxcs.t3 96 SFSLAQWQELELQALIYRHMAAGASVPPELLQLVKK 131 8*******************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.0E-10	95	131	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	8.2E-13	96	129	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.767	96	131	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.169	164	208	IPR014977	WRC domain
Pfam	PF08879	5.4E-22	165	207	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MDFNLKQWRD QQQQEQHESE DEQQQHSAKI PKYFLLESPQ QHQQHPEIAA LPLFVSSESQ 60 PNKITTTHFS EYPDHHSSNP PTAIPTRFPR VGGRYSFSLA QWQELELQAL IYRHMAAGAS 120 VPPELLQLVK KSLLTSSTAP YYLHHYSPHF QPAAAWYWGK GSMDPEPGRC RRTDGKKWRC 180 SRDVVAGHKY CERHMHRGRN RSRKPVEFPA TATATATATA TASVSAGDAL VGSLNKPSAA 240 ASVSAESQFS LSRSGASSFD AFHLNPGSSS DRKTLFGPQL ESSTCIDNGG KSDNNSSKVL 300 MQFFDDWPRS DNGEGNTITS SSGLSISTTS DFLRLSTGNG DELGRMDGNE NQERERGNRL 360 SWGADGWGTN PVTSMGGPLA EALRSSSNSS PTSVLHQLPR CSATDTSFVS T

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MDFNLKQWRD QQQQEQHESE DEQQQHSAKI PKYFLLESPQ QHQQHPEIAA LPLFVSSESQ  60
PNKITTTHFS EYPDHHSSNP PTAIPTRFPR VGGRYSFSLA QWQELELQAL IYRHMAAGAS  120
VPPELLQLVK KSLLTSSTAP YYLHHYSPHF QPAAAWYWGK GSMDPEPGRC RRTDGKKWRC  180
SRDVVAGHKY CERHMHRGRN RSRKPVEFPA TATATATATA TASVSAGDAL VGSLNKPSAA  240
ASVSAESQFS LSRSGASSFD AFHLNPGSSS DRKTLFGPQL ESSTCIDNGG KSDNNSSKVL  300
MQFFDDWPRS DNGEGNTITS SSGLSISTTS DFLRLSTGNG DELGRMDGNE NQERERGNRL  360
SWGADGWGTN PVTSMGGPLA EALRSSSNSS PTSVLHQLPR CSATDTSFVS T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021865892.1	0.0	growth-regulating factor 3 isoform X3
TrEMBL	A0A0K9R286	0.0	A0A0K9R286_SPIOL; Uncharacterized protein
STRING	XP_010683855.1	1e-175	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	5e-54	growth-regulating factor 4