PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_115570_xgsy.t1
Common NameSOVF_115570
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 506aa    MW: 57532.9 Da    PI: 6.6849
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_115570_xgsy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.21e-0690111426
                        ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                        ++C +++  G+C+ GdrC+F H 
  Sp_115570_xgsy.t1  90 VPCYYYYN-GFCNKGDRCPFLHE 111
                        79******.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.761635IPR000571Zinc finger, CCCH-type
SMARTSM003560.057734IPR000571Zinc finger, CCCH-type
PfamPF156631.5E-11764No hitNo description
PROSITE profilePS5010310.6153763IPR000571Zinc finger, CCCH-type
SMARTSM003560.523962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.13186113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-687111IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-587112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-687114IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-489111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEDELLKRNT DCVYFLASPF TCKKGVECEY RHSEMARLNP RDCWFWLSGT CFNPTCAFRH  60
PPLESHNEAS TDGAPPLLNQ SSVPATKTKV PCYYYYNGFC NKGDRCPFLH EPGEAIGLKT  120
KIANAVADSP VLPLDSKTSG RADREPVTAE KHSILSEMAM KSSSGLHNGH KQQAQHPANA  180
IIPEPSISKQ TYIPQCEETV AVKTVSLEPA ECSIKSECEP SLDSDQSSEG IIDGNIVRDE  240
WWESSPGFDV LVEGEDEEMM DDPEYLPALD GNDGDSKHLF MPHDFAHRAE YDERVFFDNG  300
HYEPSEYFKD ELRNSVPEYS SRRTQDREAK RIVERKRNIL CVESPVGGRH DVDLRDYLSK  360
RRMHGGYQET CDLRHVRDGR PESLQRHASI PRLHGRIASK VERHGVRLSR RMNDAEHRGR  420
PRNSHHNGYR QHNGMHSWQS SSERRSYSKR DRYAQESTTF CEPKTLAATK VDRNRSSNNC  480
SADFEGPKPL SEILKDKKKT VSSADV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852678.10.0zinc finger CCCH domain-containing protein 32-like
TrEMBLA0A0K9R2290.0A0A0K9R229_SPIOL; Uncharacterized protein
STRINGXP_010688036.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.28e-06zinc finger nuclease 3