PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_116470_yyhe.t1
Common NameSOVF_116470
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 348aa    MW: 38952.5 Da    PI: 7.7425
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_116470_yyhe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-0983108127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+lC  f+  G+C+ G++C+FaHg+
  Sp_116470_yyhe.t1  83 FKTRLCAKFRM-GQCRNGENCNFAHGE 108
                        69*********.*************96 PP
2zf-CCCH27.94.1e-09146169225
                        -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                        k++lC+ f+ + +C+yG+rC+F H
  Sp_116470_yyhe.t1 146 KMKLCKKFYNGEECPYGERCNFLH 169
                        789*******66************ PP
3zf-CCCH391.3e-12237262126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC  f  tG C++Gd+C+FaHg
  Sp_116470_yyhe.t1 237 WKTKLCTKFETTGLCPFGDNCHFAHG 262
                        8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.6E-1577115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-881113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.73282109IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-682108IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-783108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7144171IPR000571Zinc finger, CCCH-type
SMARTSM003560.0076144171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441144172IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-6146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-9146171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-15233266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-10234266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122236264IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7236263IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10237262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSFSDSFSSF APFSNGVDSM GGFWPQFPAS NEQPEVNSEF DHDHPPLKRV KNSSDNLSNN  60
NHTHRTPPQM NPTVNQPTGK IFFKTRLCAK FRMGQCRNGE NCNFAHGEED LRKPPPNWQE  120
LVGGRTEDRG NGGSENWEDD DRIIHKMKLC KKFYNGEECP YGERCNFLHK EPAKFREPTP  180
IRFRENSRES SAISIGTTGP PMVQQPRAPD QYDVHRMAAN GNGGMDVMRG NSKPVYWKTK  240
LCTKFETTGL CPFGDNCHFA HGHAELLLPR GHPADAETAT MSSAPLKSVS APVNDPTPVK  300
NDNGVPSGQE GQGKKCLLKW NGTKKINRIY GDWIDDLPLY LPNSKVES
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858419.10.0zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-80C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0K9R3T90.0A0A0K9R3T9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676669.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.18e-83C3H family protein