PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_117630_eqqm.t1
Common NameSOVF_117630
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 232aa    MW: 26669.6 Da    PI: 6.0335
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_117630_eqqm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.57.9e-34141471128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk....rknratksgyWkatgk 88 
                        lppGfrF+Ptdeel+ +yL+ k+ g +l++ +vi+ev+  +++Pw+Lp     +++e y F+kr  k+++g+    r+++at+sgyW++tg+
  Sp_117630_eqqm.t1  14 LPPGFRFQPTDEELLFQYLRCKIFGLPLPA-SVIPEVHFSNLDPWELPG---DSKEERYVFTKRGAKHKNGDrnhtRATKATNSGYWEETGS 101
                        79****************************.99***************3...456799*********9977622225566788********* PP

                NAM  89 dkevlskkgel.....vglkktLvfykgrapk.gektdWvmheyrl 128
                        ++++    +++     +g+kktLvf  g++p+ ++ tdW+mhey+l
  Sp_117630_eqqm.t1 102 EEHMSPPPNQNlgmpiKGVKKTLVFNIGKSPNyTSPTDWFMHEYSL 147
                        99999874433466669*********9988872568********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-408169IPR003441NAC domain
PROSITE profilePS5100540.62614169IPR003441NAC domain
PfamPF023657.4E-2115147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MKKHNFVIEG VSRLPPGFRF QPTDEELLFQ YLRCKIFGLP LPASVIPEVH FSNLDPWELP  60
GDSKEERYVF TKRGAKHKNG DRNHTRATKA TNSGYWEETG SEEHMSPPPN QNLGMPIKGV  120
KKTLVFNIGK SPNYTSPTDW FMHEYSLVYK NHQGTSKMED WVIYHVFLKQ RVEENDDAIM  180
LDYDNNNGHY NLTSNIDRYP CCSSSSSSSS NSFAEVSSYD SQSDEESSYN FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-321417017166NO APICAL MERISTEM PROTEIN
1ut4_B4e-321417017166NO APICAL MERISTEM PROTEIN
1ut7_A4e-321417017166NO APICAL MERISTEM PROTEIN
1ut7_B4e-321417017166NO APICAL MERISTEM PROTEIN
3swm_A3e-321417020169NAC domain-containing protein 19
3swm_B3e-321417020169NAC domain-containing protein 19
3swm_C3e-321417020169NAC domain-containing protein 19
3swm_D3e-321417020169NAC domain-containing protein 19
3swp_A3e-321417020169NAC domain-containing protein 19
3swp_B3e-321417020169NAC domain-containing protein 19
3swp_C3e-321417020169NAC domain-containing protein 19
3swp_D3e-321417020169NAC domain-containing protein 19
4dul_A4e-321417017166NAC domain-containing protein 19
4dul_B4e-321417017166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846193.11e-176NAC domain-containing protein 83
TrEMBLA0A0K9R1H01e-174A0A0K9R1H0_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.27e-48NAC domain containing protein 41