PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_118420_dmqw.t1

Common Name

SOVF_118420

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 480aa MW: 52696.6 Da PI: 9.7953

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_118420_dmqw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.2e-05	246	268	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++C++ F+ ++ L+ H + H Sp_118420_dmqw.t1 246 SCHKCKEQFNKWDALEAHHLSnH 268 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	247	268	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.9E-20	270	479	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
MEGGKQGKKK KQGKENSKPN VWFSLKKSLH CKSEPSDVHD PKLSSSSKNN NHHNNTNNKM 60 MNSILTRRVG RSGCSRSIAN LKDVIHGGSK RHIEKPPSCS PRSIGSSEFL NPITHEVILS 120 NNNSRCELKI TGYAPFGNFN DGFAAGGGNQ GGGGGDERVA EESAFVGTLM PGTPGPGGHP 180 TMHYFNNNNN NNNNKNNNNP LFSRTSARKS FGLERENGSG SGVNSRKRFS LEIESNNNGT 240 TLSQLSCHKC KEQFNKWDAL EAHHLSNHAV TELVEGDSSR RIVEIICRTS WPKSENHCGR 300 IERVLKVHNT QKTIARFEEY REMVKIKASK LAKKHPRCLA DGNELLRFYG TTVACSLGID 360 GSSSLCISAK CCVCRIIRNG FYTKKEIKSG VGVFTTSTSG RAFESIELFD DDGPSIKKAL 420 IVCRVIAGRV HRPLENLQEL AGQTGFDSLA GKVGLYSSIE EMYLLNPRAL LPCFVVICKP

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

MEGGKQGKKK KQGKENSKPN VWFSLKKSLH CKSEPSDVHD PKLSSSSKNN NHHNNTNNKM  60
MNSILTRRVG RSGCSRSIAN LKDVIHGGSK RHIEKPPSCS PRSIGSSEFL NPITHEVILS  120
NNNSRCELKI TGYAPFGNFN DGFAAGGGNQ GGGGGDERVA EESAFVGTLM PGTPGPGGHP  180
TMHYFNNNNN NNNNKNNNNP LFSRTSARKS FGLERENGSG SGVNSRKRFS LEIESNNNGT  240
TLSQLSCHKC KEQFNKWDAL EAHHLSNHAV TELVEGDSSR RIVEIICRTS WPKSENHCGR  300
IERVLKVHNT QKTIARFEEY REMVKIKASK LAKKHPRCLA DGNELLRFYG TTVACSLGID  360
GSSSLCISAK CCVCRIIRNG FYTKKEIKSG VGVFTTSTSG RAFESIELFD DDGPSIKKAL  420
IVCRVIAGRV HRPLENLQEL AGQTGFDSLA GKVGLYSSIE EMYLLNPRAL LPCFVVICKP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021754798.1	0.0	uncharacterized protein LOC110720106
TrEMBL	A0A0K9R2T8	0.0	A0A0K9R2T8_SPIOL; Uncharacterized protein
STRING	XP_010694273.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27240.1	1e-125	C2H2 family protein