PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_118540_mafx.t1
Common NameSOVF_118540
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 203aa    MW: 22377.8 Da    PI: 7.1432
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_118540_mafx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-192271255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+ta eAa+a++ a+++++g
  Sp_118540_mafx.t1 22 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAVEAAQAYDTAARQFRG 71
                       59*******.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-362285IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-212280IPR016177DNA-binding domain
PROSITE profilePS5103223.3272279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-312279IPR001471AP2/ERF domain
PfamPF008472.3E-122271IPR001471AP2/ERF domain
CDDcd000182.04E-312279No hitNo description
PRINTSPR003671.5E-102334IPR001471AP2/ERF domain
PRINTSPR003671.5E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016604Cellular Componentnuclear body
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVIKENPNSN SNENNNSNLE IRYRGVRKRP WGRYAAEIRD PGKKTRVWLG TFDTAVEAAQ  60
AYDTAARQFR GSKAKTNFPF TITPTAKSNS SSNGSDSATN TTSTIESLSH APSVHLNTTR  120
HHVTIDCGFG VYPFFVQQPQ VVGFVPHAFP VFYQHDLSMM QGAFEYSVAG GAQSDSDSSS  180
VVEDCQPRTE LKLDLNLAPP MEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-222382363ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842477.11e-153ethylene-responsive transcription factor 4-like
SwissprotQ9LW491e-44ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A0K9R1481e-151A0A0K9R148_SPIOL; Uncharacterized protein
STRINGXP_010666079.13e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.17e-35ethylene responsive element binding factor 4