PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_118630_cokg.t1
Common NameSOVF_118630
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YB
Protein Properties Length: 257aa    MW: 28209.3 Da    PI: 3.7817
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_118630_cokg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB353.4e-1114106692
              NF-YB   6 rflPianvsrimkkvlPa......nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                        ++lP + v r++k+ l +      +  + k+a     e +  fi ++++ a d c+  +r+ in++d+l al ++ f ++vepl++ l +++
  Sp_118630_cokg.t1  14 EELPKTIVRRVVKEKLSQistdggDVTLHKEALIAFSESARIFIHYLSATAHDICNDSNRQIINAEDVLNALEEVEFSEFVEPLRAALDEFK 105
                        57888888888888876511111133466777788899*************************************************99998 PP

              NF-YB  92 e 92 
                        +
  Sp_118630_cokg.t1 106 K 106
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-2211105IPR009072Histone-fold
PfamPF008082.8E-81585IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.49E-1717107IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGKEKATAVA TEAEELPKTI VRRVVKEKLS QISTDGGDVT LHKEALIAFS ESARIFIHYL  60
SATAHDICND SNRQIINAED VLNALEEVEF SEFVEPLRAA LDEFKKKAAG KRAGSAKAKE  120
ASKKRKTDEE TATKNVKAEV TATENGEEED TATENGKDEE TATENGEEED TATENGKDEE  180
TATENGEEED TGTENGEEEE TATENGEEEE TATENGEEED TATENGKEEE NEDEEDEEEE  240
ESENNDDNDD DDDSPDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A1e-121612618122DNA polymerase epsilon subunit D
5y27_A1e-121612618122DNA polymerase epsilon subunit D
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104125KKKAAGKRAGSAKAKEASKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856796.11e-174DNA polymerase epsilon subunit 3
TrEMBLA0A0K9R1391e-172A0A0K9R139_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-36nuclear factor Y, subunit B11