PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_119270_kfxo.t1
Common NameSOVF_119270
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 237aa    MW: 26668.8 Da    PI: 5.1592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_119270_kfxo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.72.2e-14196221126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yktelC+ +++tGtC+y  +C+FaHg
  Sp_119270_kfxo.t1 196 YKTELCNKWQETGTCPYSQQCQFAHG 221
                        9************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.97E-11192227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-18192228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727195223IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8195222IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-11196221IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDNSSNDDYA CDIIKNYCLF SSASSSPPST PSAVAADASL EAGTGLYRAR LILENQLYDE  60
LLNRYRLAIT RLRELSREAI ALQEENEWLR LTNGDLTRRL NGVLSVSEQP CVGNVFGAST  120
YSPTSTVIDD DEEEDERITL PKSISIRSPG FFKLVNSPTQ INHQSPSPTQ HVNGTKLRVK  180
NEEKALEMDV FNQGMYKTEL CNKWQETGTC PYSQQCQFAH GVSELRPVIR HPRYKTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-14196237445Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862681.11e-177zinc finger CCCH domain-containing protein 14 isoform X2
TrEMBLA0A0K9R0X41e-177A0A0K9R0X4_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010693523.11e-107(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-40C3H family protein