PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_121000_ftug.t1
Common NameSOVF_121000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 242aa    MW: 27145.6 Da    PI: 6.778
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_121000_ftug.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-1186132654
                        HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          rE++RRd++N++f+eL  +l +     + +K +Ka+iL+ A++ +k L
  Sp_121000_ftug.t1  86 ACREKQRRDHLNNRFFELSAMLESgT---TTPKSDKAAILTDAIRQVKLL 132
                        579*********************66...***************977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.34180132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-1285152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-986132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-986138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.32E-1088135No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1288156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146860.00372127163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MESLEGVEFD LNWVCSLLDD IPTTCCDSTT RFDVPLPSIP RLNSFPSSTS HSLDTQDSSE  60
GLDGSEDCCR KRVRVGSVAA SSSFKACREK QRRDHLNNRF FELSAMLESG TTTPKSDKAA  120
ILTDAIRQVK LLREESSSLT RQNAELKQKN NELKAEKKAL RAEKHSLVSE KEKMEQRIKE  180
LDTRPNLQFH PSSVPTPYAM PYQSVGGKLM PLVNYSSVPF WQFVPQAAFD TSQDHVLHPP  240
VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866561.10.0transcription factor ILR3-like
TrEMBLA0A0K9R0D71e-179A0A0K9R0D7_SPIOL; Uncharacterized protein
STRINGXP_008224874.11e-67(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-43bHLH family protein