PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_121560_akwa.t1

Common Name

SOVF_121560

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 228aa MW: 26529.7 Da PI: 9.942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_121560_akwa.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.8	2e-05	24	46	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+k+F ++++L H tH Sp_121560_akwa.t1 24 FACRICDKMFLSSYSLIEHYETH 46 78******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	6.07E-6	23	49	No hit	No description
PROSITE profile	PS50157	11.635	24	51	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.0E-5	24	49	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	26	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSAQWNFQLG NQHSRVYVSS PMVFACRICD KMFLSSYSLI EHYETHRGEF ARRTQSNQTT 60 PYYRNGRERN LNNNPFPFRS QPSTLQQRYH PYYRNGFRTL QYQRNLAATQ RNPFLASTQN 120 SVQPRYLVAD HNTLGGVSLQ FPNPRSGRTV AGSSHLLIRQ RQPSPQRVSP PHQEPFPNIG 180 GKNGYDQLAE NGTVWYLSQL EKPIPKIIDL EKEDETHEYL KLDLTLQL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9R0B0	1e-169	A0A0K9R0B0_SPIOL; Uncharacterized protein
STRING	XP_010671204.1	2e-70	(Beta vulgaris)