PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_121780_ueai.t1
Common NameSOVF_121780
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 93aa    MW: 10410.7 Da    PI: 8.5328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_121780_ueai.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.0001520601454
                       HHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                       d+i +   +L++l+P+    a+ +   s   +L++++ YI++L
  Sp_121780_ueai.t1 20 DQIADLVRKLQQLVPEiH--ARRTSdKSANRVLQETCTYIRNL 60
                       57888889********77..444444555679*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.05E-62078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-72074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSSRRSRSRQ SGGVSSISDD QIADLVRKLQ QLVPEIHARR TSDKSANRVL QETCTYIRNL  60
HREVDDLSDR LAELLASTDS DSAQAAIIRS LLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844581.15e-59transcription factor PRE6-like
SwissprotQ9LJX14e-36PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0K9R0851e-57A0A0K9R085_SPIOL; Uncharacterized protein
STRINGXP_010681766.13e-44(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-35bHLH family protein