PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_122780_mkon.t1

Common Name

SOVF_122780

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bZIP

Protein Properties

Length: 362aa MW: 40800.2 Da PI: 7.2594

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_122780_mkon.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.4e-10	79	112	5	38
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k++rr+++NReAAr+sR+RKka++++Le +L Sp_122780_mkon.t1 79 KVQRRLAQNREAARKSRLRKKAYVQQLESSRLKL 112 99*************************9843333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0054	75	128	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.186	77	121	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-7	79	116	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.34E-7	79	125	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-8	79	127	No hit	No description
PROSITE pattern	PS00036	0	82	97	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.4E-30	166	239	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MSSTTIQVTN SATMGIYELP KAISMWRDTS KAIIASGAGA SSSTQAESEH ENKFDYEYGS 60 PEMMEPPLSG EDAARLSEKV QRRLAQNREA ARKSRLRKKA YVQQLESSRL KLAQLEQQIQ 120 QTKQQVSFGG AAFHANLGFT GHISTGLSTF EIEYGHWVEE QNRQNSELRN ALQANVSDVE 180 LRILVEGGLN HYYSLFRIKA DAAKADVFYL MSGMWRTSVE RFFLWIGGFR PSELLNILMP 240 QLEPLSNQQM EDIGKLRYAS RQAEDALSRG VDKLQQTLNQ IMFTDPLGVE MYGIQMASAL 300 EKLEAIEGFV NQADHLREQT LTLMSRILTP RQSARGLLAL GEYFHRLRAL SSLWAARPRD 360 PG

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MSSTTIQVTN SATMGIYELP KAISMWRDTS KAIIASGAGA SSSTQAESEH ENKFDYEYGS  60
PEMMEPPLSG EDAARLSEKV QRRLAQNREA ARKSRLRKKA YVQQLESSRL KLAQLEQQIQ  120
QTKQQVSFGG AAFHANLGFT GHISTGLSTF EIEYGHWVEE QNRQNSELRN ALQANVSDVE  180
LRILVEGGLN HYYSLFRIKA DAAKADVFYL MSGMWRTSVE RFFLWIGGFR PSELLNILMP  240
QLEPLSNQQM EDIGKLRYAS RQAEDALSRG VDKLQQTLNQ IMFTDPLGVE MYGIQMASAL  300
EKLEAIEGFV NQADHLREQT LTLMSRILTP RQSARGLLAL GEYFHRLRAL SSLWAARPRD  360
PG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021847299.1	0.0	transcription factor TGA7-like
Swissprot	Q93ZE2	1e-138	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A0K9QZU2	0.0	A0A0K9QZU2_SPIOL; Uncharacterized protein
STRING	XP_010692601.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-131	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]