PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_123000_huqx.t1
Common NameSOVF_123000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 615aa    MW: 66534.2 Da    PI: 5.2593
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_123000_huqx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS442.53e-1352466041374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        lv++L++cAea++++++ la+alL+++  la+++  +m+++a+yf+eALa+r+++        + p    + n s+ l++   f+e++P+lk
  Sp_123000_huqx.t1 246 LVHTLMACAEAIEQQNMGLAEALLKQIGFLAASQVGSMRKVATYFAEALARRVYK--------VCPDVPYDGNLSDMLQM--HFYETCPYLK 327
                        689***************************************************9........22222333446666555..5********* PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        f+h+taNqaIlea++g+++vH+iDf++++G+QWpaL+qaLa Rpegpp +R+Tg+g+p+++++++l+e+g++La+fA++++++fe++ +va+
  Sp_123000_huqx.t1 328 FAHFTANQAILEAFSGKKKVHVIDFSMKEGMQWPALMQALALRPEGPPAFRLTGIGPPAPDNSDRLQEVGWKLAQFADSIQIQFEYRGFVAN 419
                        ******************************************************************************************** PP

               GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        +l+dle   L+++p  E++aVn+v++lhrll+++++ ++    vL l+k+++P +v+vveqea+hn++ Flerf e+l+yys+lfdsle+ +
  Sp_123000_huqx.t1 420 SLTDLESALLELRPdTEVVAVNSVFELHRLLARPGAADK----VLGLMKEVNPVIVTVVEQEANHNGPAFLERFNESLHYYSTLFDSLESCV 507
                        **************99***************99988888....************************************************7 PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                           +++++++++++lg +i+nvvaceg +r+erhet+++Wr r+++aGF pv+++++a kqa++ll  ++ +dgy vee+ g+l+lgW++rp
  Sp_123000_huqx.t1 508 ---DSQDKMMSEMYLGSQICNVVACEGVDRVERHETVAQWRTRFGKAGFAPVHIGSNAFKQASMLLDFFAgGDGYGVEENGGCLMLGWHSRP 596
                        ...88889999999****************************************************************************** PP

               GRAS 367 LvsvSaWr 374
                        L+++SaW+
  Sp_123000_huqx.t1 597 LITTSAWQ 604
                        *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011291.9E-3743116No hitNo description
PfamPF120417.6E-3743109IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.501220583IPR005202Transcription factor GRAS
PfamPF035141.0E-132246604IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MKRELPFSNP GPSAGGGGSL GGGPPTTTGK SKMWEDQNDA GVDELLAVLG YKVRSSDMAE  60
VAQKLEQLEQ AMGNVREDGL SQLASETVHY NPSDLSTWLE SMLSEFNPSS TSFDPANPIL  120
LPSIGSRVDP IIVNPTPQGS VKFGGSDPYS DYDLKAIPGK AILTPPSPSS SALVVNNSSS  180
SNSLVSTTTS SSSSREAKRL KASSYTNPQS AKATASGLTS SILTTNTAVS SRPVVLVDSQ  240
ENGVRLVHTL MACAEAIEQQ NMGLAEALLK QIGFLAASQV GSMRKVATYF AEALARRVYK  300
VCPDVPYDGN LSDMLQMHFY ETCPYLKFAH FTANQAILEA FSGKKKVHVI DFSMKEGMQW  360
PALMQALALR PEGPPAFRLT GIGPPAPDNS DRLQEVGWKL AQFADSIQIQ FEYRGFVANS  420
LTDLESALLE LRPDTEVVAV NSVFELHRLL ARPGAADKVL GLMKEVNPVI VTVVEQEANH  480
NGPAFLERFN ESLHYYSTLF DSLESCVDSQ DKMMSEMYLG SQICNVVACE GVDRVERHET  540
VAQWRTRFGK AGFAPVHIGS NAFKQASMLL DFFAGGDGYG VEENGGCLML GWHSRPLITT  600
SAWQLAQNSK SPIRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-6124160314378Protein SCARECROW
5b3h_A6e-6124160313377Protein SCARECROW
5b3h_D6e-6124160313377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864610.10.0DELLA protein GAIP-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A0K9R1U00.0A0A0K9R1U0_SPIOL; Uncharacterized protein
STRINGXP_010681882.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein