PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_123370_zcss.t1
Common NameSOVF_123370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 291aa    MW: 32425.4 Da    PI: 7.3281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_123370_zcss.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06132151120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++Cp C+k+F+r  nL+ H+
  Sp_123370_zcss.t1 132 FSCPLCSKTFNRYNNLQMHM 151
                        89*****************9 PP
2zf-C2H215.35.6e-05216238123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk F  k + ++H +++
  Sp_123370_zcss.t1 216 FMCRKCGKAFAVKGDWRTHEKNC 238
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.91E-6125154No hitNo description
SMARTSM003550.049132154IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.5E-5132151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.783132159IPR007087Zinc finger, C2H2
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
SuperFamilySSF576679.42E-7200236No hitNo description
Gene3DG3DSA:3.30.160.602.6E-6212236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.787216236IPR007087Zinc finger, C2H2
SMARTSM0035550216236IPR015880Zinc finger, C2H2-like
SMARTSM00355160242265IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MPPRCSLISS FETGETKSES EAVHITNSSP NLSMTSTTDD DESMTVSLRI GLPTQPSSSY  60
AYADAGAEHK EDECSAVVYP NSDADGDADD VDLLPLSPPK LDHQTTQIQT QGVGLQYWIP  120
TPSQILIGPT QFSCPLCSKT FNRYNNLQMH MWGHGSQYRR GPESLKGTQP TPMLRVPCYC  180
CAPGCKHNIE HPRARPLKDF RTLQTHYKRK HGVKPFMCRK CGKAFAVKGD WRTHEKNCGR  240
VWYCVCGSDF KHKRSLKDHI KAFGHGHFAF GANGLEECFD EAHVSDADSN L
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861886.10.0zinc finger protein WIP5-like
SwissprotQ9SVY11e-109ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0K9R1Q00.0A0A0K9R1Q0_SPIOL; Uncharacterized protein
STRINGXP_010695304.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-103C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]