PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_124790_idzk.t1
Common NameSOVF_124790
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 730aa    MW: 80132.9 Da    PI: 5.7884
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_124790_idzk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.13.6e-1961116156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++e+e++F+++++p+ ++r+eL+++l L+  qVk+WFqN+R+++k
  Sp_124790_idzk.t1  61 KKRYHRHTQHQIQEMENFFKECPHPDDKQRKELSRRLTLEPLQVKFWFQNKRTQMK 116
                        688999***********************************************998 PP
2START213.48.2e-672534731206
                        HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
              START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                        ela +a++el+++a+a++p+W  s+    e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     + 
  Sp_124790_idzk.t1 253 ELAVAAMEELIRMAQAGDPLWIPSPdnttEMLNEEEYFRTFPRGIGpmplgMKSEASRDSAVVIMNHLNLVEILMDVN-QWSCVFSgivsRS 343
                        57899**************************************999********************************.************* PP

                        EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
              START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                        +tl+v+s+g      galq+m+ae+q++splvp R+ +fvRy++q+g+ +w++vdvS+d  ++ p    v R++++pSg+li++++ng+skv
  Sp_124790_idzk.t1 344 MTLDVLSTGvagnfnGALQVMTAEFQVPSPLVPtRENYFVRYCKQHGDSTWAVVDVSLDGLRPSP----VPRCRRRPSGCLIQELPNGYSKV 431
                        ***************************************************************98....7********************** PP

                        EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                         wvehv++++r +++l+r lv+sgla+gak+wv+tl+rqce+
  Sp_124790_idzk.t1 432 MWVEHVEVDDRAVSNLYRALVNSGLAFGAKRWVSTLDRQCER 473
                        ****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-1848118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-2049116IPR009057Homeodomain-like
PROSITE profilePS5007116.42258118IPR001356Homeobox domain
SMARTSM003892.5E-1659122IPR001356Homeobox domain
CDDcd000861.34E-1761119No hitNo description
PfamPF000469.1E-1761116IPR001356Homeobox domain
PROSITE patternPS00027093116IPR017970Homeobox, conserved site
PROSITE profilePS5084844.329244476IPR002913START domain
SuperFamilySSF559618.24E-37244475No hitNo description
CDDcd088751.42E-127248472No hitNo description
SMARTSM002347.6E-66253473IPR002913START domain
PfamPF018521.0E-55254473IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-4349473IPR023393START-like domain
SuperFamilySSF559611.92E-26493722No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MFQPNMYESH HQLLDMGAGH KTPDSELGKM RDDEFESSRS ATENLEGLSG DDQDPNQRPK  60
KKRYHRHTQH QIQEMENFFK ECPHPDDKQR KELSRRLTLE PLQVKFWFQN KRTQMKAQHE  120
RSENQQLRNE NEKLRADNIR FKEALSNATC PNCGGPAAIG EMSFDEQQLR IENARLREEI  180
DRISGIAAKY VGKPLVTYPH MQNQGLHSRS SLDLGVGTFG PQSGMVPDMY GSAGDLLRSV  240
APPTEADKPM IIELAVAAME ELIRMAQAGD PLWIPSPDNT TEMLNEEEYF RTFPRGIGPM  300
PLGMKSEASR DSAVVIMNHL NLVEILMDVN QWSCVFSGIV SRSMTLDVLS TGVAGNFNGA  360
LQVMTAEFQV PSPLVPTREN YFVRYCKQHG DSTWAVVDVS LDGLRPSPVP RCRRRPSGCL  420
IQELPNGYSK VMWVEHVEVD DRAVSNLYRA LVNSGLAFGA KRWVSTLDRQ CERLASVMAN  480
NIPAGEGGVI TSPEGRKSML KLAERMVMSF CAGVGASTAH TWTTLSGSGA DDVRVMTRKS  540
MDDPGRPPGI VLSAATSFWM PVSPKRVFDF LRDENSRNEW DILSNGGLVQ EMAHIANGRD  600
PGNCVSLLRV NSANSSQSNM LILQESSTDS TGSYVIYAPV DIVAMNVVLN GGDPDYVALL  660
PSGFAILPDG PVGGGGLDAG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVER  720
IKAAVACETA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853797.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
RefseqXP_021853798.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A0K9R0U50.0A0A0K9R0U5_SPIOL; Uncharacterized protein
STRINGXP_010665524.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]