PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_125230_eyow.t1
Common NameSOVF_125230
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 409aa    MW: 44744.4 Da    PI: 6.5877
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_125230_eyow.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.57e-184898155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       ++y+GVr+++ +gr++AeIrdp     +  r +lg+++taeeAa a++ a+++++g
  Sp_125230_eyow.t1 48 TRYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTYDTAEEAACAYDCAARAMRG 98
                       68********.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-114898IPR001471AP2/ERF domain
PROSITE profilePS5103222.35249106IPR001471AP2/ERF domain
SMARTSM003801.0E-3349112IPR001471AP2/ERF domain
CDDcd000184.48E-3049105No hitNo description
Gene3DG3DSA:3.30.730.102.8E-2949106IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2149106IPR016177DNA-binding domain
PRINTSPR003675.2E-95061IPR001471AP2/ERF domain
PRINTSPR003675.2E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MEQQFKHHNH FTTSYTHSFV DHHHHHNPIE KLAEPTATTT ATATAKTTRY RGVRRRPWGR  60
YAAEIRDPQS KERRWLGTYD TAEEAACAYD CAARAMRGSK ARTNFTYGPS LLSDHDIMYP  120
PPLPPFLNSP ASKKKSHPSI KSTKVNPSPP NNPTFVEWLN SAQITQNHHQ NNHVMMMMIN  180
GSDDGNCGMM MGFSDESPAP ALQRNNNNNM NCNKFSDLFP SSSPHGNSLM LLPPSSSSSS  240
SAVNHENDDD YHQKDDMMDF FPSEPSETSG LLEEIIEKYF PKRNPTKSYT EHPSCITPDN  300
NTQNDNFGVC FDANYYNIGG GGGGGGGGGV SGGGFDTVPF QGSMTAALGG VIGGGGGGGG  360
GGNYEMIGLP QYQYNEAMML DDRHIGGLFQ YNELYNMLAA PRGAKCLGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1945105162ATERF1
3gcc_A4e-1945105162ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132136KKKSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853209.10.0ethylene-responsive transcription factor ESR1-like
TrEMBLA0A0K9QZ010.0A0A0K9QZ01_SPIOL; Uncharacterized protein
STRINGXP_010682509.14e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-10ERF family protein