PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_126070_ofpz.t1
Common NameSOVF_126070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family DBB
Protein Properties Length: 310aa    MW: 33774.7 Da    PI: 4.916
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_126070_ofpz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.5e-06447542
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                        C+ +e  e+   C  ++  lC+dC ++ H        H++v+l
  Sp_126070_ofpz.t1  4 QCNVCETAEAVVLCCADEAALCHDCDEKVHAAnklaskHQRVSL 47
                       7******99*********************66889999998875 PP
2zf-B_box26.31.6e-085486335
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                       +++C+ ++e    +fC +++ llC++C  ++H 
  Sp_126070_ofpz.t1 54 MPNCDICQETVGYFFCLEDRALLCRKCDISIHT 86
                       789******99*********************3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
CDDcd000211.40E-7347No hitNo description
SMARTSM003363.2E-8447IPR000315B-box-type zinc finger
SMARTSM003361.5E-135299IPR000315B-box-type zinc finger
PROSITE profilePS501198.8165299IPR000315B-box-type zinc finger
PfamPF006432.1E-65495IPR000315B-box-type zinc finger
CDDcd000211.74E-85799No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKIQCNVCET AEAVVLCCAD EAALCHDCDE KVHAANKLAS KHQRVSLSNS SSHMPNCDIC  60
QETVGYFFCL EDRALLCRKC DISIHTVNSF VSTHQRFLLT GVKVGLEPAA PGSSSSGGTS  120
YSVEKASDAE NRATLKRSAP TSTTSEYARA DPVQRGVETV MPSKRSITKL VANEFPKIQP  180
VQSGALEDIT QSRMTVAGGS AAGTLHQWPM DEYLGLNDFQ LNYGFHDNVS SKADSGKLGD  240
CESSYLRSIE DDLDSDDRLG QVPDVSWTVP QVPSPPTASG LYWPKTSNHL VDNAVFVPDI  300
CWPQEPNYYQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842603.10.0B-box zinc finger protein 22
TrEMBLA0A0K9R0T50.0A0A0K9R0T5_SPIOL; Uncharacterized protein
STRINGXP_010675280.11e-180(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-79light-regulated zinc finger protein 1