PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_126100_ygxu.t1
Common NameSOVF_126100
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YB
Protein Properties Length: 247aa    MW: 27499.8 Da    PI: 6.1719
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_126100_ygxu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB145.89.3e-4664156294
              NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 
                        req+ ++Pianv+ri+++ lP nak++++ake+vqecvsefisf+tsea++ cq e+rkti+++d++ a++ lGf++yvepl++yl+kyre 
  Sp_126100_ygxu.t1  64 REQELYMPIANVVRIIRQGLPPNAKVADEAKEMVQECVSEFISFITSEANETCQLEHRKTITAEDVIRAMSRLGFDHYVEPLTIYLQKYRES 155
                        89****************************************************************************************98 PP

              NF-YB  94 e 94 
                        e
  Sp_126100_ygxu.t1 156 E 156
                        7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.2E-4660156IPR009072Histone-fold
SuperFamilySSF471131.26E-3566157IPR009072Histone-fold
PfamPF008084.8E-2370133IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-1697115No hitNo description
PRINTSPR006151.5E-16116134No hitNo description
PRINTSPR006151.5E-16135153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPLVGNADGL DNRMANNIQS SMQNHFESKH DQTQINISNN KNHDLHTNHK TPKLGSKAPK  60
AAFREQELYM PIANVVRIIR QGLPPNAKVA DEAKEMVQEC VSEFISFITS EANETCQLEH  120
RKTITAEDVI RAMSRLGFDH YVEPLTIYLQ KYRESEMLPP IPRHGVGNMG LESGNVLPPF  180
AVVHPQFSMF KTSSENQGLY TATVCDGSGP RLGLGIGGES NDSEATDPSE SPHAGQYFYN  240
PYGYYRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-4264154797NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850640.10.0nuclear transcription factor Y subunit B-5-like
TrEMBLA0A0K9R0E70.0A0A0K9R0E7_SPIOL; Uncharacterized protein
STRINGXP_010669682.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21970.16e-45NF-YB family protein