PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_126950_zaup.t1

Common Name

SOVF_126950

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Trihelix

Protein Properties

Length: 376aa MW: 41998.4 Da PI: 9.8338

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_126950_zaup.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.4	3.8e-18	30	104	1	71
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr 71 +Wt++e+laLi a+++++ +lrr++l+ ++We+v++ + ++ +++ qC++k+e+l+kry+++k++ + Sp_126950_zaup.t1 30 CWTQDETLALIHAYQDKWYSLRRRNLRTADWEAVADEVnrrcPDQSPPKTSAQCRHKMEKLRKRYRAEKQRIGAL 104 8*********************************9966666677788999***************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.0E-20	29	130	No hit	No description
PROSITE profile	PS50090	6.388	31	91	IPR017877	Myb-like domain
SMART	SM00595	7.0E-7	38	135	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MPSPPPGDGD VPQPPGNPPL PVVRKFPAPC WTQDETLALI HAYQDKWYSL RRRNLRTADW 60 EAVADEVNRR CPDQSPPKTS AQCRHKMEKL RKRYRAEKQR IGALPCHNNF VGNRFFPSSS 120 WVFFDLMDAM EIGPGPGSGS TTIINNGINS NNNNVNLQNL SKDNLQNHLQ NGVFVKEEKN 180 RGKDDLGKYF DEILMGMGKG GSGSGGGAPI KFKVKNHQNN INNHDRYFDD PNQNKYEGYD 240 YDGGNNGRSN YASGFTNKRR FGEDLSSSKM AFLNNGGSSS SKKGLGSGSG MGPGPGSRVR 300 GRDPGAGEMV ASIKMLGEAL VRTEKEKLEM MQEMEMKWME MEMKRTQMIL EAQHNIVNAF 360 VQGFKKQKKV KVMEVE

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MPSPPPGDGD VPQPPGNPPL PVVRKFPAPC WTQDETLALI HAYQDKWYSL RRRNLRTADW  60
EAVADEVNRR CPDQSPPKTS AQCRHKMEKL RKRYRAEKQR IGALPCHNNF VGNRFFPSSS  120
WVFFDLMDAM EIGPGPGSGS TTIINNGINS NNNNVNLQNL SKDNLQNHLQ NGVFVKEEKN  180
RGKDDLGKYF DEILMGMGKG GSGSGGGAPI KFKVKNHQNN INNHDRYFDD PNQNKYEGYD  240
YDGGNNGRSN YASGFTNKRR FGEDLSSSKM AFLNNGGSSS SKKGLGSGSG MGPGPGSRVR  300
GRDPGAGEMV ASIKMLGEAL VRTEKEKLEM MQEMEMKWME MEMKRTQMIL EAQHNIVNAF  360
VQGFKKQKKV KVMEVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841225.1	0.0	trihelix transcription factor ASIL2-like
TrEMBL	A0A0K9QYJ4	0.0	A0A0K9QYJ4_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	4e-32	Trihelix family protein