PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_127920_qtcs.t1
Common NameSOVF_127920
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 335aa    MW: 35719.9 Da    PI: 4.8706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_127920_qtcs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-1598149155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sp_127920_qtcs.t1  98 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 149
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-1098149IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-1898159IPR016177DNA-binding domain
CDDcd000189.40E-2798159No hitNo description
PROSITE profilePS5103219.04599157IPR001471AP2/ERF domain
SMARTSM003807.9E-3499163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1899157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
EDGASGSTSD NSHELSFLGV GGGLLQVGLF PTVETVTVAS TGGGSGGGGG YSSEYQQQVQ  60
VQEAEHLVDT TSNKQQLAVV AAPSGGRKAV EGFGQRTSIY RGVTRHHQHG RWQARIGRVA  120
GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDISR YDVKSIISSN LPVGGMSNKS  180
KSIPDHEEIK PLEGIKPELP PLIPTPHQSS TIYNHNFIGI PLRPDSSTQN YNWPALGQLE  240
NNEAALGYTS FGYVQQQQPG NNDGANTATE GYNGYLGISN NNDDDDNNNN NGDNGRDVNG  300
CSISSSWSIV TPSLHSLQSP KQNVPVLQTP IFGIE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838783.11e-161AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0K9QZV90.0A0A0K9QZV9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010688479.11e-117(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.12e-47AINTEGUMENTA-like 5