PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_128690_efym.t1
Common NameSOVF_128690
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 94aa    MW: 10800.3 Da    PI: 5.6803
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_128690_efym.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.8e-153712599
                       TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3 25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       +hg++   s  + l+ +sg++We+ l   +  g+++l+kGW eFvk   L++g  ++Fk++g+s+f   v +f++
  Sp_128690_efym.t1  3 THGSN--LSNVIYLNIPSGKVWEFDL--VRENGKTFLQKGWPEFVKFYSLNDGHCLLFKYEGESRF--DVVIFDT 71
                       56655..677899999**********..8888899**************************99999..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.69172IPR003340B3 DNA binding domain
CDDcd100179.75E-12170No hitNo description
SuperFamilySSF1019364.12E-17272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-17272IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-11470IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MRTHGSNLSN VIYLNIPSGK VWEFDLVREN GKTFLQKGWP EFVKFYSLND GHCLLFKYEG  60
ESRFDVVIFD TSTSEIEYPL GPKACPKLTS CDIM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847781.13e-65B3 domain-containing protein At1g49475-like
TrEMBLA0A0K9QZL02e-64A0A0K9QZL0_SPIOL; Uncharacterized protein
STRINGXP_010681213.12e-34(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-18B3 family protein