PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_128700_dopc.t1

Common Name

SOVF_128700

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 424aa MW: 48346.4 Da PI: 8.4026

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_128700_dopc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.4	1.4e-14	91	179	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+l++s+v+ +++lp +f+++h ++ tle+ s + ++ k+ ++++ l++GWk+F+ + +L egD +vF+l+++++f Sp_128700_dopc.t1 91 FVKALVKSHVTGCFWMRLPAPFCQTHLP--VIDTFFTLETHSKKLYKAKY--LASRQG--LSGGWKGFAVSERLLEGDALVFHLISDTKF-- 174 89**********************53..36678***********..777777..9**********************98888.. PP EEEEE CS B3 93 vvkvf 97 +v v+ Sp_128700_dopc.t1 175 KVYVI 179 66665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-17	83	182	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.69E-21	84	181	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.59E-20	89	180	No hit	No description
Pfam	PF02362	9.0E-13	91	179	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.532	91	182	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-14	91	182	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MSSPSSPHPI PVPFQAESSK LLKNKRSNRN SIKRTWSHLI PCFETGLRHQ HRKPKRRRPT 60 GLESADKIFK SAVINQAEEF QSKLDPEYPS FVKALVKSHV TGCFWMRLPA PFCQTHLPVI 120 DTFFTLETHS KKLYKAKYLA SRQGLSGGWK GFAVSERLLE GDALVFHLIS DTKFKVYVIK 180 ENNLTEVDGT LSSINLNTHE IQSDPGIVDQ TSMQPPQNSE SNSTGNSGRV VDGFPIYEEA 240 TLSPNTVSTF ENFSIVINDL LKDYELPRHI KWSYYKLCCS QDALLHEQLP QWMNHILVGG 300 IIIETVTIAD ALRQCELSTP KEEFAVWDKT LSALELLGMN VGFLRTHQHR LQRIVHDPEV 360 AIVKQKCLEL CAENSRAEDE IRSLTARLVE MKKVHIKRAT DIDNLKSKLS NHEIRFQELV 420 HTPW

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MSSPSSPHPI PVPFQAESSK LLKNKRSNRN SIKRTWSHLI PCFETGLRHQ HRKPKRRRPT  60
GLESADKIFK SAVINQAEEF QSKLDPEYPS FVKALVKSHV TGCFWMRLPA PFCQTHLPVI  120
DTFFTLETHS KKLYKAKYLA SRQGLSGGWK GFAVSERLLE GDALVFHLIS DTKFKVYVIK  180
ENNLTEVDGT LSSINLNTHE IQSDPGIVDQ TSMQPPQNSE SNSTGNSGRV VDGFPIYEEA  240
TLSPNTVSTF ENFSIVINDL LKDYELPRHI KWSYYKLCCS QDALLHEQLP QWMNHILVGG  300
IIIETVTIAD ALRQCELSTP KEEFAVWDKT LSALELLGMN VGFLRTHQHR LQRIVHDPEV  360
AIVKQKCLEL CAENSRAEDE IRSLTARLVE MKKVHIKRAT DIDNLKSKLS NHEIRFQELV  420
HTPW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021852302.1	0.0	B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBL	A0A0K9QXY4	0.0	A0A0K9QXY4_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-39	B3 family protein