PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_128760_inxm.t1
Common NameSOVF_128760
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 335aa    MW: 36100.1 Da    PI: 8.3615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_128760_inxm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001597116221
                        EETTTTEEESSHHHHHHHHH CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                        +C+ Cgk+F ++  L  H+r
  Sp_128760_inxm.t1  97 PCTECGKTFWSWKALFGHMR 116
                        5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.02196118IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.49496123IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-997118No hitNo description
Gene3DG3DSA:3.30.160.607.1E-498118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-798120IPR007087Zinc finger, C2H2
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-9169196No hitNo description
PfamPF139121.6E-9173197IPR007087Zinc finger, C2H2
SMARTSM003550.42174196IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471174201IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SuperFamilySSF576671.57E-5246275No hitNo description
SMARTSM003550.12250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829250277IPR007087Zinc finger, C2H2
PfamPF139121.0E-12250274IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDDTPLPPPL PLPQSQLQIQ PHPQLQPVPL SVAPPIQIPY VHNHQNIQLP FLPPTTPTSS  60
SPTASLRKKR RSKLLRIDTA TAAPKKPEPS ATEITPPCTE CGKTFWSWKA LFGHMRCHPE  120
RQWRGINPPP HLRQRPTPPP TPSTTDDREV AASLLLLAAG PTSPDFATTS MARFECSSCK  180
KTFGSHQALG GHRASHKNVK GCFAITKDST DHVEDDHFIT MQSGPSHDEG IGLSLSLGLG  240
LGLGVGHNIH KCGVCLKVFP TGQALGGHMR CHWEKSEDQP SPSPLSFGLS IGSDSRPIKP  300
QSGIDLNLPA QHLVDASSSS VGSSNNMQLE LSLAI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16673RKKRRSKL
26772KKRRSK
Functional Description ? help Back to Top
Source Description
UniProtMediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021867288.10.0zinc finger protein ZAT3-like
SwissprotO654994e-67ZAT3_ARATH; Zinc finger protein ZAT3
TrEMBLA0A0K9R0270.0A0A0K9R027_SPIOL; Uncharacterized protein
STRINGXP_010690656.11e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.14e-62C2H2-like zinc finger protein