PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_128960_yioi.t1
Common NameSOVF_128960
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 284aa    MW: 31313.5 Da    PI: 8.2157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_128960_yioi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011219240323
                        ETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                        Cp C+ +Fs+   L+ H ++ H
  Sp_128960_yioi.t1 219 CPQCNARFSSVTKLVEHVQKvH 240
                        ******************9988 PP
2zf-C2H217.21.4e-05257278323
                        ETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                        Cp+C++ F+++  L++H  + H
  Sp_128960_yioi.t1 257 CPKCSRGFTDPVALVKHVEKdH 278
                        *****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183104.71E-13649No hitNo description
PROSITE profilePS510397.6591056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.9E-111152IPR000058Zinc finger, AN1-type
SMARTSM001543.0E-41352IPR000058Zinc finger, AN1-type
PfamPF014282.2E-131349IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.109.6E-1190144IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.22E-893140No hitNo description
PROSITE profilePS510397.86698151IPR000058Zinc finger, AN1-type
SMARTSM001540.2101142IPR000058Zinc finger, AN1-type
PfamPF014283.7E-8101140IPR000058Zinc finger, AN1-type
SMARTSM003550.013217240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.078217245IPR007087Zinc finger, C2H2
PfamPF138946.4E-4219240No hitNo description
PROSITE patternPS000280219240IPR007087Zinc finger, C2H2
SMARTSM003558.3255278IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933255283IPR007087Zinc finger, C2H2
PROSITE patternPS000280257278IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MGTPAFPDLG KHCSFDRCKQ IDFLPFTCDR CDQVYCLEHR SYREHQCPHG DNQGVTVVIC  60
PLCAKGVRLI PDEDPNITWE SHVNTVCDPQ NYEKVTKKRK CPVIGCKEIL VFSNTVKCKD  120
CSTDHCLKHR FGPDHKCPGP PKSNIGFPFM GLLTSNSRKE VTRPNQAPVK STSSAWSRFV  180
DAAEAGMSKL SNDFSQVLQV GQGSNSSTST GEPGGQEMCP QCNARFSSVT KLVEHVQKVH  240
ERSNNCVGVR KSTIDACPKC SRGFTDPVAL VKHVEKDHGG TSRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846550.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-122SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A0K9R0070.0A0A0K9R007_SPIOL; Uncharacterized protein
STRINGXP_010666757.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-124C2H2 family protein