PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_128970_nfkt.t1
Common NameSOVF_128970
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 141aa    MW: 16366.5 Da    PI: 9.6718
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_128970_nfkt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.65.9e-20354556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++t++qle Le+ Fe++r+++ +++ +LA+ l L+ rqV vWFqNrRa++k
  Sp_128970_nfkt.t1  3 RRLTTKQLESLESSFEEERKLDPDRKMKLARDLALQPRQVAVWFQNRRARWK 54
                       579************************************************9 PP
2HD-ZIP_I/II110.51.2e-35289390
        HD-ZIP_I/II  3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                       krrl+++q+++LE+sFeee+kL+p+rK++lar+L lqprqvavWFqnrRAR+k+k+l + y+aLk  ++ +++e+++L++eve+L++ 
  Sp_128970_nfkt.t1  2 KRRLTTKQLESLESSFEEERKLDPDRKMKLARDLALQPRQVAVWFQNRRARWKAKKLQHLYDALKLDFELVSKEKHKLQQEVERLKSI 89
                       9************************************************************************************964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.459156IPR001356Homeobox domain
SuperFamilySSF466891.2E-17265IPR009057Homeodomain-like
SMARTSM003891.4E-13260IPR001356Homeobox domain
PfamPF000462.7E-17354IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.1E-21363IPR009057Homeodomain-like
CDDcd000864.76E-82157No hitNo description
PROSITE patternPS0002703154IPR017970Homeobox, conserved site
PfamPF021831.4E-75889IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MKRRLTTKQL ESLESSFEEE RKLDPDRKMK LARDLALQPR QVAVWFQNRR ARWKAKKLQH  60
LYDALKLDFE LVSKEKHKLQ QEVERLKSIM VMEEATKKQV YSSYTEASCE ETVESTSAAA  120
ANQYTGRNSG SNNGADDIVL N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15058ARWKAKKLQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865529.12e-98putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-39ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A0K9QXW84e-99A0A0K9QXW8_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010683925.16e-63(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-30homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]