PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_129130_upzh.t1
Common NameSOVF_129130
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 315aa    MW: 34887.6 Da    PI: 4.5019
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_129130_upzh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1793142255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp +   + r +lg+f taeeAa  ++aa+ +++g
  Sp_129130_upzh.t1  93 KYRGVRQRP-WGKYAAEIRDPAT---KSRKWLGTFETAEEAAVVYDAAAIQYRG 142
                        8********.**********843...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-2992151IPR001471AP2/ERF domain
PROSITE profilePS5103222.78793150IPR001471AP2/ERF domain
CDDcd000188.94E-3193150No hitNo description
SMARTSM003803.4E-3593156IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2193151IPR016177DNA-binding domain
PfamPF008474.3E-1093142IPR001471AP2/ERF domain
PRINTSPR003671.2E-994105IPR001471AP2/ERF domain
PRINTSPR003671.2E-9116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRSLPTVKYS EHRSVTNKIF DLSFPYPKIV RISVRDDEAT DSSGDEDEPT CRTRVVKHVS  60
EIRFQLGDPE LPKKTEKTAK TGNDRRQTGA PRKYRGVRQR PWGKYAAEIR DPATKSRKWL  120
GTFETAEEAA VVYDAAAIQY RGPLALTNFP RPQPVEVTVP SLSEEDYEMG QRLCSPTSVL  180
QYHQGGDGND VEERETEKLK TTGKRGGPSS SSSSLTTSSS SSDLVGSRKP EDQVMSLPGG  240
DLMELDIPCF LNGLFSYDDD APKSIFSVDD GWGLLADFPP LDHGDLEDFS ALDLDFNGDD  300
FLLSAGCEAD DYLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2292150160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849110.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A0K9QXU40.0A0A0K9QXU4_SPIOL; Uncharacterized protein
STRINGXP_010669419.13e-80(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.13e-33cytokinin response factor 6