PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_129220_gqpn.t2

Common Name

SOVF_129220

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C3H

Protein Properties

Length: 388aa MW: 42845 Da PI: 9.1277

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_129220_gqpn.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.5e-06	125	142	1	18
--S---SGGGGTS--TTT CS zf-CCCH 1 yktelCrffartGtCkyG 18 yktelC+ + +G C+yG Sp_129220_gqpn.t2 125 YKTELCMSWENSGVCHYG 142 9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.5E-10	123	159	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.028	124	155	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MKGYYSSSSS SVNSSNGSPK MNLRNDSVSP MNLPKESVLM RYLRSGQPSD LDFSSSSSKR 60 SPILTYHNSG SSSCKSPLSA VENLEDDVLV MDGILVDSNK VSKSAGKFRS PGSSDSSSNS 120 AINLYKTELC MSWENSGVCH YGHKSKPFKF AHGKEEVRPT PNLVRKDHHI MDMEFVNPYY 180 SPQSSTYGSE SRRFALETVV TPPAKETAKS MFNRALPQQE APMFVTSNPY YSPQSSTYSS 240 DSNIFALDTM VTPPAKETAK SFLNRPLPQP KEAPTFNTSN PYYSPVSSTY NSCSTRKFAL 300 KTKETPPPTK EAANSKLHQA LPIQSKNAPT VSPHLTSPDW SPLDDNITIT YASSNETPPR 360 KAIDEHMHRA IYGPTQMKRL PVFVDICL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MKGYYSSSSS SVNSSNGSPK MNLRNDSVSP MNLPKESVLM RYLRSGQPSD LDFSSSSSKR  60
SPILTYHNSG SSSCKSPLSA VENLEDDVLV MDGILVDSNK VSKSAGKFRS PGSSDSSSNS  120
AINLYKTELC MSWENSGVCH YGHKSKPFKF AHGKEEVRPT PNLVRKDHHI MDMEFVNPYY  180
SPQSSTYGSE SRRFALETVV TPPAKETAKS MFNRALPQQE APMFVTSNPY YSPQSSTYSS  240
DSNIFALDTM VTPPAKETAK SFLNRPLPQP KEAPTFNTSN PYYSPVSSTY NSCSTRKFAL  300
KTKETPPPTK EAANSKLHQA LPIQSKNAPT VSPHLTSPDW SPLDDNITIT YASSNETPPR  360
KAIDEHMHRA IYGPTQMKRL PVFVDICL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021838174.1	0.0	uncharacterized protein LOC110777900 isoform X1
TrEMBL	A0A0K9QXT5	0.0	A0A0K9QXT5_SPIOL; Uncharacterized protein
STRING	XP_010687506.1	2e-59	(Beta vulgaris)