PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_129670_igyd.t1

Common Name

SOVF_129670

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

YABBY

Protein Properties

Length: 211aa MW: 23740.7 Da PI: 8.2361

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_129670_igyd.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	223.1	8.1e-69	12	182	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk.veeenlksn.vekeesas 93 + sseq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+++ + +++ + +++ +++ + e ++ ++++++ Sp_129670_igyd.t1 12 VPSSEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCTNLWSVNMAAAFQSLTSSWQQHHQQNFHQAPNNGnMGEYRIDNLgSSSSKCNY 103 6799********************************************999998877666666665544430444444333123334444 PP YABBY 94 tsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++++++ s ++++++ ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Sp_129670_igyd.t1 104 NHKAATTMriSPPLNNHLAEERIINRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 182 444444443377778888888889***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-70	14	182	IPR006780	YABBY protein
SuperFamily	SSF47095	7.07E-8	127	175	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-4	130	176	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSSCVDQAAA AVPSSEQLCY IPCNFCNIVL AVSVPCNNLF DIVTVRCGHC TNLWSVNMAA 60 AFQSLTSSWQ QHHQQNFHQA PNNGNMGEYR IDNLGSSSSK CNYNHKAATT MRISPPLNNH 120 LAEERIINRP PEKRQRVPSA YNQFIKEEIQ RIKANNPDIS HREAFSTAAK NWAHFPHIHF 180 GLMLETNNNQ AKLDEGSQKH LMPRTTALLN N

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667743	5e-47	KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds.
GenBank	KJ667745	5e-47	KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.
GenBank	KJ667747	5e-47	KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857617.1	1e-158	axial regulator YABBY 5
Swissprot	Q8GW46	1e-77	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0K9QZA0	1e-157	A0A0K9QZA0_SPIOL; Uncharacterized protein
STRING	XP_010687959.1	1e-122	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-80	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]