PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_129920_pdnh.t1
Common NameSOVF_129920
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 133aa    MW: 14597.1 Da    PI: 7.4113
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_129920_pdnh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-201465256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr ++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+  ++g+
  Sp_129920_pdnh.t1 14 KYRGVRKRP-WGKYAAEIRDSTR---HgARVWLGTFNTAEEAARAYDRAAYTMRGH 65
                       8********.**********422...25**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.70E-181472No hitNo description
PfamPF008475.2E-151465IPR001471AP2/ERF domain
SMARTSM003802.2E-331477IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-311473IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-231473IPR016177DNA-binding domain
PROSITE profilePS5103223.4061472IPR001471AP2/ERF domain
PRINTSPR003677.7E-121526IPR001471AP2/ERF domain
PRINTSPR003677.7E-123854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEDDKECGGG GEVKYRGVRK RPWGKYAAEI RDSTRHGARV WLGTFNTAEE AARAYDRAAY  60
TMRGHLAILN FPSEYNLPRG GSSSRGGGGG GGSSSSSTSR NNVAKEVFEF ECMDDKLLEE  120
LLDYDDSKMS GRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-371411714114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863160.11e-93ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0K9QZ702e-92A0A0K9QZ70_SPIOL; Uncharacterized protein
STRINGXP_009354933.13e-46(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.14e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]