PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_129930_dnqd.t1
Common NameSOVF_129930
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 160aa    MW: 18088.9 Da    PI: 8.8034
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_129930_dnqd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-201768256
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       +y+GVr+++ +g+++AeIrdp+++g  +r++lg+f +ae Aa+a+++a+ kl+g+
  Sp_129930_dnqd.t1 17 RYRGVRRRP-WGKFAAEIRDPTKQG--ARVWLGTFESAEAAARAYDQAAFKLRGH 68
                       6********.**********98865..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.4E-231776IPR016177DNA-binding domain
SMARTSM003801.3E-371781IPR001471AP2/ERF domain
CDDcd000181.99E-191776No hitNo description
Gene3DG3DSA:3.30.730.101.7E-311777IPR001471AP2/ERF domain
PfamPF008471.5E-141768IPR001471AP2/ERF domain
PROSITE profilePS5103224.9351775IPR001471AP2/ERF domain
PRINTSPR003678.6E-111829IPR001471AP2/ERF domain
PRINTSPR003678.6E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEGSSRGKQQ EGGEDVRYRG VRRRPWGKFA AEIRDPTKQG ARVWLGTFES AEAAARAYDQ  60
AAFKLRGHLA TLNFPNEYYA KLDPIHHLSN ASRYYGTNRQ IDFSSASSPS SISSGRRVEK  120
GSGSSVTNVG PPRQERQVIE FEYLDDRVLE DMLRRSEEDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-281278975Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863149.11e-113ethylene-responsive transcription factor ERF098-like
RefseqXP_021863150.11e-113ethylene-responsive transcription factor ERF098-like
RefseqXP_021863152.11e-113ethylene-responsive transcription factor ERF098-like
RefseqXP_021863153.11e-113ethylene-responsive transcription factor ERF098-like
RefseqXP_021863154.11e-113ethylene-responsive transcription factor ERF098-like
RefseqXP_021863155.11e-113ethylene-responsive transcription factor ERF098-like
RefseqXP_021863156.11e-113ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0K9QXI61e-114A0A0K9QXI6_SPIOL; Uncharacterized protein
STRINGXP_010671052.16e-72(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-32ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]