PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_131580_yrmf.t1
Common NameSOVF_131580
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 356aa    MW: 39768 Da    PI: 7.6581
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_131580_yrmf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-083554626
                       -SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                       C f++r G C yG+rC++ H+
  Sp_131580_yrmf.t1 35 CTFYQR-GACAYGSRCRYDHV 54
                       999999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.324128IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5162956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00523155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-53353IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-63554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474134161IPR000571Zinc finger, CCCH-type
SMARTSM003560.029135160IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.24E-13191267No hitNo description
Gene3DG3DSA:3.30.40.103.6E-10196262IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.77E-4202262No hitNo description
PfamPF000979.8E-8203260IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.268203261IPR001841Zinc finger, RING-type
SMARTSM001842.4E-7203260IPR001841Zinc finger, RING-type
PROSITE patternPS005180227236IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.031290318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291290319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MSNRVLCKFF KHGACLKGEH CEYAHDWNTP ANNTCTFYQR GACAYGSRCR YDHVKVSHLQ  60
SSASSSSTAF IRNETPGVTT SGVAPVSQVS SVQQELSPST TQFHPPNKAA WNQQSGISDT  120
AEDDLIPQPK SDRLVDQVIC SFAAAGNCPK GEKCPHIHGD LCPTCGKHCL HPFRPKEREE  180
HFQTCEKMQK HLEALKRSQE IECSVCLERV LTKPAASERK FGLLSECDHP FCITCIRNWR  240
NSSPSSGMDV NSTLRACPIC RKLSYFVIPS VLWYFSKEEK DEIVDSYMAR LKSIDCKYFD  300
FGSGSCPFGT SCFYKHAYRD GSVEEVVLRH LGAADGETII AKNISLADFL RNLHIS
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860995.10.0putative RING-type E3 ubiquitin transferase C3H69
RefseqXP_021860996.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotQ5ZA071e-165C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0K9QYM60.0A0A0K9QYM6_SPIOL; Uncharacterized protein
STRINGXP_010695330.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-149C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]