PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_132280_cdhh.t1
Common NameSOVF_132280
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 252aa    MW: 27261.7 Da    PI: 7.5003
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_132280_cdhh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.53.9e-37321321100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                        +C aCk+lrrkC+k+Cv+apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +l++eA  r+rdPvyG+v++i++lqqq+ +++
  Sp_132280_cdhh.t1  32 PCGACKYLRRKCVKGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHRRLDAVVTLCFEALSRVRDPVYGCVAHIFTLQQQVLNMQ 123
                        7***********************9989**************************************************************** PP

             DUF260  92 aelallkee 100
                        aela ++++
  Sp_132280_cdhh.t1 124 AELAFVQAR 132
                        ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.33831133IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3632130IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSNHQQQNNN NQWHGGDGGG GSSNNGGGLG GPCGACKYLR RKCVKGCVFA PYFDSEQGTA  60
HFAAVHKVFG ASNASKLLLR IPAHRRLDAV VTLCFEALSR VRDPVYGCVA HIFTLQQQVL  120
NMQAELAFVQ ARLSTLQRLP ATYPAVDHQT PTTPCCLDQI SASSGINTST TNAVTSSMPL  180
FDNFALHSQP TLSSLAAAPP VTAAELASYC NISDYQQFQH HDLIFEDGDL QTLTREFVSK  240
YLPGVKFKSE PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-36281267104LOB family transfactor Ramosa2.1
5ly0_B5e-36281267104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858931.10.0LOB domain-containing protein 31-like
SwissprotO813222e-67LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0K9QWU80.0A0A0K9QWU8_SPIOL; Uncharacterized protein
STRINGXP_010692268.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-65LOB domain-containing protein 31