PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_132290_iexy.t1
Common NameSOVF_132290
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 428aa    MW: 47474.3 Da    PI: 6.9742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_132290_iexy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.53.1e-10155176526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         C+ ++r+G C++Gd C FaHg
  Sp_132290_iexy.t1 155 VCPEYRRSGSCSRGDECEFAHG 176
                        7********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.91E-6149180IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028151178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-6154178IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-8155176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4183214IPR000571Zinc finger, CCCH-type
SMARTSM003561.6186209IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484186210IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGSVCAEHHH HHHGGGYKFH PLMSPKKALQ DLNIPPRKLL SRRSDASSLS SSADYFSPSS  60
EAAAAMMHKF LPCNTTNNGG SGDSSSSNGG GDGSDNGVFD PDDDPYSSDE FRMYEFKVRK  120
CTRSRSHDWT DCPFSHPGEK ARRRDPRRFH YSGTVCPEYR RSGSCSRGDE CEFAHGVFEC  180
WLHPARYRTE ACKDGKNCKR KVCFFAHSPR ELRVLPAEED GDEKDSCCHR GKRDDHHHHQ  240
HQHQHQQHCC RYCCTLSPTS TLLGLSNFSP PMSPMKAVGA RGLSGFSRYS DRVSACGTKG  300
LSYEDIVIAE LLGSLEGMSL NDAAAMTTPN KTTHGRGLWV DVGDYDSGSG IGCGGDEYQH  360
FQQHTPQQQQ QQMQFTLSPS TPINQQSVFS SPRNNVNYFN GNPESSVSVP TIVTDESPDL  420
GWVNDLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852183.10.0zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A0K9QWU30.0A0A0K9QWU3_SPIOL; Uncharacterized protein
STRINGXP_010689060.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.18e-77C3H family protein