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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sp_132790_ckrd.t2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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| Family | B3 | ||||||||
| Protein Properties | Length: 1089aa MW: 124455 Da PI: 9.1206 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 45.1 | 1.8e-14 | 64 | 153 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
+kv+++s+v+ l+lp +f+++h +k++ + ++le+ +g+++e ++ + ++ l++GWk+F+ +L+egD+vvF+l++ +f +
Sp_132790_ckrd.t2 64 VKVMVKSNVSGGFFLRLPPPFCRAHLPVKNR-TVMVLETDTGERYEANY--LPQYCG--LSGGWKRFAIVMKLEEGDTVVFQLVEPAKF--K 148
699**********************656544.5888999**********..666666..9**********************9875555..7 PP
EEEE- CS
B3 94 vkvfr 98
v ++r
Sp_132790_ckrd.t2 149 VYFIR 153
76665 PP
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| 2 | B3 | 39.2 | 1.2e-12 | 252 | 333 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+v+ + l+lp ++++ h +++++le e+g++++ k+ +s++ l++GW F+ +L+egD++vF+l++ +f +v ++r
Sp_132790_ckrd.t2 252 NVSHGCSLILPEQYCSVHLP--VIETDMVLEIETGEQYTTKY--LPRSCK--LSDGWHMFATNMRLEEGDVIVFHLVEAAKF--KVYFIR 333
6788899********98853..46679***************..888866..***********************9876666..666665 PP
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| 3 | B3 | 31.7 | 2.8e-10 | 354 | 427 | 19 | 99 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
p +f+++h + +++tl++++e+g+++e ++ + r + +++Wk+F +++L++gD vvF+l++ ++f +v ++r+
Sp_132790_ckrd.t2 354 PTPFCRAHLPQ--KDTTLVFQTETGEQYEANY--LARYLR-FGGGCWKRFPLDKELEAGDAVVFHLVEVTKF--KVYIIRA 427
889*****533..6789***************..444444.46889*******************9987777..9998886 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 2.3E-15 | 57 | 153 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 2.94E-17 | 57 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 1.1E-16 | 63 | 155 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 11.307 | 63 | 155 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 7.88E-20 | 64 | 153 | No hit | No description |
| Pfam | PF02362 | 4.0E-13 | 64 | 153 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 4.9E-14 | 238 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.9E-13 | 240 | 335 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 10.123 | 244 | 335 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 9.9E-6 | 244 | 335 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 4.98E-15 | 248 | 333 | No hit | No description |
| Pfam | PF02362 | 1.1E-10 | 252 | 333 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 7.6E-6 | 338 | 428 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.8E-11 | 351 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 2.5E-8 | 354 | 427 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 5.15E-11 | 354 | 426 | No hit | No description |
| SuperFamily | SSF101936 | 7.26E-11 | 354 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 9.897 | 354 | 428 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF56574 | 1.7E-45 | 750 | 1076 | IPR023796 | Serpin domain |
| Gene3D | G3DSA:3.30.497.10 | 1.1E-38 | 773 | 1020 | No hit | No description |
| Pfam | PF00079 | 2.0E-31 | 777 | 943 | IPR023796 | Serpin domain |
| SMART | SM00093 | 6.7E-8 | 786 | 1079 | IPR023796 | Serpin domain |
| Pfam | PF00079 | 2.5E-7 | 1001 | 1077 | IPR023796 | Serpin domain |
| Gene3D | G3DSA:2.30.39.10 | 1.6E-8 | 1021 | 1077 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1089 aa Download sequence Send to blast |
MRNPGKQKEV KAENFNNNST KQKKLWAEKI RRKYMRLSRV LRKCNSIQAT KIQSKLNVEH 60 PATVKVMVKS NVSGGFFLRL PPPFCRAHLP VKNRTVMVLE TDTGERYEAN YLPQYCGLSG 120 GWKRFAIVMK LEEGDTVVFQ LVEPAKFKVY FIRVNSTNEV HLPFHLLNLV NRVESGVSRK 180 AGKNQKSFYR SEEVHQNYLQ GKQKDFGTEK IRRKDLLVPQ VLGKSNLVHA KNIQSELDFK 240 HPLTLQGLKK WNVSHGCSLI LPEQYCSVHL PVIETDMVLE IETGEQYTTK YLPRSCKLSD 300 GWHMFATNMR LEEGDVIVFH LVEAAKFKVY FIRVNSANEV NLSPHILNTF QSPPTPFCRA 360 HLPQKDTTLV FQTETGEQYE ANYLARYLRF GGGCWKRFPL DKELEAGDAV VFHLVEVTKF 420 KVYIIRANAS EVNLPVHLLE LLGHVQQSVS GKPDSKQQTV DRREVNQREH NRRKSARLNP 480 RNTEVSTVLL HEKMIFSNIN SFEEFKSVMN ELIQNQKLPY YAMHGYYELC CNQKEFLHAR 540 LSVLINPRLT NQVIIGVIRR IIFDIVNITD ALTTCELSTF LHNYALWDES LKTYETLGMN 600 VGFLLARLHH LEKVAVSSES AADRCRYEEA CHENLRAKSE VRKLDLILAK LQTLKLKPRD 660 ETYRKAEISE LEVMISGFGK FFLQYDAHIE TLKLKVKTHE LKFQEEVSSS XLLPLARAFC 720 TRPAFSLLNN FAYHRLLRIS SEGISTNTFR QQQQHSYTTS LPSITCKDLN KKLPHDHDFS 780 FDLAKQSLLH GLKRTPQENL LCSPVSTSAV LNMLVPGSKG QTLDQFLDVL GLKEENLNKS 840 ATKLIDVVRP LFKVGGDGAE ISFSNGVWVD REYPLMRSYK EVLDSVHEAD VKSVDFLYKT 900 DEVKEEIDLW GRTKTKGMIK NILQETSYYN DTVMVLANAL HFKFESSYEI VDLSKTQPLL 960 HYCGSFDGSE VLRMPYKQGC RTNKATLQKA GKMELIKILD SPVSELLYVT DITQKSRIET 1020 SEGGTSFSVV TYTSLCGPSH RCSPVLPSKV NFVAENPFMF MIREDFSGGV VSVGTMLSTS 1080 LSSQEVLHA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3le2_A | 6e-22 | 768 | 979 | 4 | 230 | Serpin-ZX |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021862881.1 | 0.0 | B3 domain-containing protein Os01g0234100-like isoform X3 | ||||
| TrEMBL | A0A0K9QUI8 | 1e-167 | A0A0K9QUI8_SPIOL; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G19184.1 | 6e-28 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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