PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_134890_nniw.t1

Common Name

SOVF_134890

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

YABBY

Protein Properties

Length: 229aa MW: 25463.7 Da PI: 9.6323

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_134890_nniw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	222.5	1.2e-68	18	187	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes..hldeslkee.lleelkveeenlksnvekeesa 92 f sseq+Cy+qC+ C+t+lavsvPs+sl+k+vtvrCGhCt+ll vn + + + hl++++ + + l+ ++ ++ Sp_134890_nniw.t1 18 FPSSEQLCYLQCSRCDTVLAVSVPSSSLYKTVTVRCGHCTHLLPVNTRSLLPPPPPPNqlHLSHNFFSPtSHYRLGEMPNQSPNFSLTQPGG 109 789*****************************************9999966555551156666554425555555555555555555555 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + +ls+ +e+prvp ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ihfgl Sp_134890_nniw.t1 110 ASNYMTPTLSRGGANELPRVPTTNRPPEKRQRVPSAYNRFIKDEIQRIKAQNPDITHREAFSAAAKNWAHFPHIHFGL 187 555666789*****************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-65	20	187	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-8	132	180	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	8.7E-5	136	179	IPR009071	High mobility group box domain
CDD	cd00084	2.84E-5	141	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSSSTSSTIT TNLSLDPFPS SEQLCYLQCS RCDTVLAVSV PSSSLYKTVT VRCGHCTHLL 60 PVNTRSLLPP PPPPNQLHLS HNFFSPTSHY RLGEMPNQSP NFSLTQPGGA SNYMTPTLSR 120 GGANELPRVP TTNRPPEKRQ RVPSAYNRFI KDEIQRIKAQ NPDITHREAF SAAAKNWAHF 180 PHIHFGLMPD QTVKRTSNMR PHHPQEAGED VRMRTGYYGA QANVGVSPY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269\|PubMed:10323860, ECO:0000269\|PubMed:10331982, ECO:0000269\|PubMed:10457020, ECO:0000269\|PubMed:11812777, ECO:0000269\|PubMed:12417699, ECO:0000269\|PubMed:19837869, ECO:0000269\|PubMed:9878633, ECO:0000269\|Ref.3, ECO:0000269\|Ref.6}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855930.1	1e-171	axial regulator YABBY 5-like
Swissprot	O22152	5e-70	YAB1_ARATH; Axial regulator YABBY 1
TrEMBL	A0A0K9QY62	1e-169	A0A0K9QY62_SPIOL; Uncharacterized protein
STRING	XP_010676177.1	1e-127	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-72	YABBY family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lian H,Li X,Liu Z,He Y HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis. J. Exp. Bot., 2013. 64(11): p. 3397-410 [PMID:23918970] Tameshige T, et al. Pattern dynamics in adaxial-abaxial specific gene expression are modulated by a plastid retrograde signal during Arabidopsis thaliana leaf development. PLoS Genet., 2013. 9(7): p. e1003655 [PMID:23935517] Boter M, et al. FILAMENTOUS FLOWER Is a Direct Target of JAZ3 and Modulates Responses to Jasmonate. Plant Cell, 2015. 27(11): p. 3160-74 [PMID:26530088] Douglas SJ,Li B,Kliebenstein DJ,Nambara E,Riggs CD A novel Filamentous Flower mutant suppresses brevipedicellus developmental defects and modulates glucosinolate and auxin levels. PLoS ONE, 2017. 12(5): p. e0177045 [PMID:28493925] Tanaka W,Toriba T,Hirano HY Three TOB1-related YABBY genes are required to maintain proper function of the spikelet and branch meristems in rice. New Phytol., 2017. 215(2): p. 825-839 [PMID:28556940] Silverblatt-Buser EW,Frick MA,Rabeler C,Kaplinsky NJ Genetic Interactions Between BOB1 and Multiple 26S Proteasome Subunits Suggest a Role for Proteostasis in Regulating Arabidopsis Development. G3 (Bethesda), 2018. 8(4): p. 1379-1390 [PMID:29487187]