PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_135450_chwe.t1
Common NameSOVF_135450
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 538aa    MW: 60462.7 Da    PI: 5.5752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_135450_chwe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-17561361399
                        TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        s++l++p +fa++++    e+k   +ed++g++Wev+l  ++  g+  ++kGW+eF+ ++ ++ gDfvv+++ + s f   v++f +
  Sp_135450_chwe.t1  56 SQLLIVPPRFAKTIMAM--EGKNTYFEDSTGQKWEVNL--SNVNGSLAFQKGWNEFCVDHAIELGDFVVLHYFKGSHF--IVQIFGR 136
                        5679**********755..5668***************..999999*************************9987888..9999987 PP
2B339.31.2e-124535321796
                        E--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                 B3  17 vlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         lpk+   ++  + ++ e+  + l+d+ gr W v +    ++g  vl++GWkeF k+n ++ gD ++F++++++e+  +v++
  Sp_135450_chwe.t1 453 ELPKPLPVKIhrQDENLEQNLVLLRDPVGRLWPVVH--HLRKGFEVLGSGWKEFRKSNSIQPGDECTFEVENKDEGIIRVQI 532
                        56666644554533444667899*************..77777889***********************8877887677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.15544137IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-2244139IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-2144139IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-1845134No hitNo description
SMARTSM010195.2E-1146137IPR003340B3 DNA binding domain
PfamPF023624.7E-1556136IPR003340B3 DNA binding domain
SMARTSM010190.0034438536IPR003340B3 DNA binding domain
CDDcd100173.53E-9448519No hitNo description
SuperFamilySSF1019363.53E-14451531IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-10454532IPR003340B3 DNA binding domain
PROSITE profilePS5086311.533458536IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-13458533IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MLFNRLSTVC NRRIMGGKME ACAECSRSCS SLHRSKLDPY PIVSSFFKIM FGIQFSQLLI  60
VPPRFAKTIM AMEGKNTYFE DSTGQKWEVN LSNVNGSLAF QKGWNEFCVD HAIELGDFVV  120
LHYFKGSHFI VQIFGRSGCE KPMIYSGMNY QNKRTKLADP CDSTDKETPA TECLDSFKDA  180
SPAVNVTQRK DDLCNVEKSA DIGVNVDNVT RQGNTNKRPK VVPATDFLLE SFFMTNRNTS  240
SGKEDDRSDL YDLSVFEKPG NRVDTDKMSM LIGNTCSKVC TALQETQIEE ASPDVVKYQM  300
TENTFELSNE ADWSRKECVV VALPNNRVDM PLNFSMPLDS LTFPNPNEFS ALASPFEPPG  360
ERMRIVKQEP QPGDVICALN ANTLSRDSAV LFGNKGHKAK NKYIGSHSTA IVEYKGNTDM  420
SLKKEAPELC DSSSVPDIKI TCLVQQDSEY FLELPKPLPV KIHRQDENLE QNLVLLRDPV  480
GRLWPVVHHL RKGFEVLGSG WKEFRKSNSI QPGDECTFEV ENKDEGIIRV QIVSPLSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855252.10.0B3 domain-containing protein Os01g0905400-like isoform X1
TrEMBLA0A0K9QVV90.0A0A0K9QVV9_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.11e-13B3 family protein