PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_137990_dqfz.t1
Common NameSOVF_137990
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 253aa    MW: 27426.2 Da    PI: 9.0835
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_137990_dqfz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.3e-10102146554
                        HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L++l+P+ +      K + a++L + v+Y+k L
  Sp_137990_dqfz.t1 102 HSIAERLRRERIAERIRALQDLVPSvN------KTDRAAMLDEIVDYVKFL 146
                        99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1595156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.14597146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-1599156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7102146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMLQLSSGPG GFHGPPVFPL GLSLDQGGKP GGGFMKHDEG SSSANKRFRD DPQHHLLDAS  60
ANSLHKNVYH GQPMSNPVPV APHQPAVRPR VRARRGQATD PHSIAERLRR ERIAERIRAL  120
QDLVPSVNKT DRAAMLDEIV DYVKFLRLQV KVLSMSRLGG AGAVVPLVTD MPISSVEEEG  180
GEGGRGQPVW EKWSNDGTER QVAKLMEENV GAAMQFLQSK ALCIMPISLA SAIYHTQPPD  240
SGSLVKPESN PPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632GGKPGGG
2106111RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843822.10.0transcription factor UNE12
SwissprotO227681e-113UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0K9QWS90.0A0A0K9QWS9_SPIOL; Uncharacterized protein
STRINGXP_010679161.11e-156(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]