PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_138070_fzod.t1
Common NameSOVF_138070
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 737aa    MW: 83258.4 Da    PI: 5.1424
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_138070_fzod.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.91.7e-1033677352374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        + lL++cA+++++ +l+ a +++++++e++sp+gd +qR+a+y++++L+arl +++ el++a +  +      se+l+a ++++   P+  +
  Sp_138070_fzod.t1 367 RGLLTRCAQCIAQVNLNGAYEMIKQIREHSSPYGDFLQRVAHYLANGLEARLEGKGLELSHANEEIS-----ASEVLKANRIYVASVPFQIM 453
                        679***************************************************6666665443333.....6799**************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                        s+ t N++I   v ++  +HiiDf+i +GlQWp+++q L++Rp+gpp++RiTg++ p+ g   +e++eetg+ Lak++e+ +vpfe+ + ++
  Sp_138070_fzod.t1 454 SYYTMNKTIAGLVMEAPSIHIIDFGIYYGLQWPCIIQNLSKRPNGPPRIRITGIDFPQRGfrPSERVEETGRCLAKYCEKYNVPFEYYP-IS 544
                        **********************************************************99*****************************.7* PP

               GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                        k++ed++leeL+++++E l+Vn+ ++ h l+desv+ +s+rd++Lklv++++P+++ ++  ++  + + Fl+rf e + +ysalfd +e+++
  Sp_138070_fzod.t1 545 KNWEDVKLEELKIDRNEPLVVNCLYRAHLLFDESVEENSPRDAFLKLVRKINPDIFMHAVLNSTSSVPFFLNRFKEVMFHYSALFDIFESTM 636
                        ******************************************************************************************** PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                         +e++er  +E +l g+e+ nv+aceg er+er e++++W+ r ++aGF+++ l+ +   +a++++r+   ++++ + +  ++v+gWk+r L
  Sp_138070_fzod.t1 637 MKEDSERLLLESKLYGPEALNVIACEGMERVERPESYKQWQIRTQRAGFEQLGLDRELLRKARAMVRTSFRQEFSYDVDAYWVVQGWKGRIL 728
                        ********************************************************************99899******************* PP

               GRAS 368 vsvSaWr 374
                        +++S+W+
  Sp_138070_fzod.t1 729 YAISCWK 735
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.371340715IPR005202Transcription factor GRAS
PfamPF035146.0E-101367735IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MNFYGFNPEI SCPFLGDQHN FEPSFPNYNH QISYDDNRNS IHNVSAQIEH PPFDECQIVP  60
LNLGSLLPND PLDLTQVPEI PDTCFNYIND LLREEYYSPD DHLDTPNSTL EDYMAAQMSY  120
NKSLDAALNL GENFPIPFSS NTYRDHHQCP PPGVSETNHH CLDDYLNMFS GNINNSNTST  180
VYFPQSVLQS SFVNNDFGGT FVSSLPLVES SLSHGVDPVP TPGVMIDGGG GGGGGGGGES  240
DHLDEAALGF MMNNALLQAP LIGQSVGNSE ASICRNSDHN NGENNNNSRR RKHDEGNGKE  300
QEGNGDRRNK QLAPSNDVVE QIEQYGEVIL CPEGRSKPGA LYICKTKNSG DSSKKRGNKG  360
RQVVDLRGLL TRCAQCIAQV NLNGAYEMIK QIREHSSPYG DFLQRVAHYL ANGLEARLEG  420
KGLELSHANE EISASEVLKA NRIYVASVPF QIMSYYTMNK TIAGLVMEAP SIHIIDFGIY  480
YGLQWPCIIQ NLSKRPNGPP RIRITGIDFP QRGFRPSERV EETGRCLAKY CEKYNVPFEY  540
YPISKNWEDV KLEELKIDRN EPLVVNCLYR AHLLFDESVE ENSPRDAFLK LVRKINPDIF  600
MHAVLNSTSS VPFFLNRFKE VMFHYSALFD IFESTMMKED SERLLLESKL YGPEALNVIA  660
CEGMERVERP ESYKQWQIRT QRAGFEQLGL DRELLRKARA MVRTSFRQEF SYDVDAYWVV  720
QGWKGRILYA ISCWKPT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4237273624379Protein SCARECROW
5b3h_D4e-4237273624379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863656.10.0scarecrow-like protein 30
TrEMBLA0A0K9QWW80.0A0A0K9QWW8_SPIOL; Uncharacterized protein
STRINGXP_010686165.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.21e-144GRAS family protein